Job Description Q06065 Confidence 99.44% Date Thu Jan 5 12:33:23 GMT 2012 Rank 136 Aligned Residues 218 % Identity 11% Template c3bosA_ PDB info PDB header:hydrolase regulator,dna binding protein Chain: A: PDB Molecule:putative dna replication factor; PDBTitle: crystal structure of a putative dna replication regulator hda2 (sama_1916) from shewanella amazonensis sb2b at 1.75 a resolution Resolution 1.75 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		131	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		H	L	H	Q	A	L	S	T	S	W	Q	W	G	H	.	I	L	T	N	S	P	A	M	M	D	I	C	K	D	T	A	K	I	A	L	S	Q	A	S	V	L	I	S	G	E	S	G	T	G	K	E	L	I	A	R	A	I	H	Y	N	S	R	R	A	K	G	P	F	I	K	V	N	C	A	A	L	P	E	S	L
Query Conservation																.
Alig confidence																.																	.	.
Template Conservation																																	.	.
Template Sequence		S	L	P	V	H	L	P	D	D	E	T	F	T	S	Y	Y	P	G	N	D	E	L	I	G	A	L	K	S	A	A	S	.	.	G	D	G	V	Q	A	I	Y	L	W	G	P	V	K	S	G	R	T	H	L	I	H	A	A	C	A	R	A	N	E	L	E	R	R	S	F	Y	I	P	L	G	I	H	A	S	I	S
Template Known Secondary structure									T	T		S	T	T	T	S																	.	.	T		S		S							S	T	T	S	S															T	T								G	G	G	G	G	G	S
Template Predicted Secondary structure																																	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.			.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence		L	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	Q	T	L	R	Q	G	L	F	E	R	A	N	E	G	T	L	L	L	D	E	I	G	E	M	P	.	.	L	V	L	Q	A	K	L	L	R	I	L	Q	E	R	E	F	E	R	I	G	G	H	Q	T	I	K	V	D	I	R	I	I	A	A	T	N	R
Query Conservation																																											.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.														.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.
Template Sequence		T	A	L	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	E	Q	F	D	L	I	C	I	D	D	V	D	A	V	A	G	H	P	L	W	E	E	A	I	F	D	L	Y	N	R	.	.	.	.	.	.	.	.	.	V	A	E	Q	K	R	G	S	L	I	V	S	A	S	A
Template Known Secondary structure		G	G	G	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	G	G	S	S						T	G	G	G	G	T	T															.	.	.	.	.	.	.	.	.						S								S	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.																				100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.										.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		D	L	Q	A	M	V	K	E	G	T	F	R	E	D	L	F	Y	R	L	N	.	V	I	H	L	I	L	P	P	L	R	D	R	R	E	D	I	S	L	L	A	N	H	F	L	Q	K	F	S	S	E	N	Q	R	D	I	I	D	I	D	P	M	A	M	S	L	L	T	A	W	S	W	P	G	N	I	R	E	L	S
Query Conservation																						.
Alig confidence									.	.	.											.														.	.	.	.	.	.	.	.	.																												.
Template Conservation									.	.	.																									.	.	.	.	.	.	.	.	.																												.
Template Sequence		S	P	X	E	A	G	F	.	.	.	V	L	P	D	L	V	S	R	X	H	W	G	L	T	Y	Q	L	Q	P	X	X	D	D	E	.	.	.	.	.	.	.	.	.	K	L	A	A	L	Q	R	R	A	A	X	R	G	L	Q	L	P	E	D	V	G	R	F	L	L	N	R	.	X	A	R	D	L	R	T	L	F
Template Known Secondary structure			T	T	T	T	T		.	.	.												S										G	G	G	.	.	.	.	.	.	.	.	.												T	T															.	T	T	T
Template Predicted Secondary structure									.	.	.																									.	.	.	.	.	.	.	.	.																												.
Template SS confidence
		147	.	.	150	.	.	.				.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.										.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.
		367	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		N	V	I	E	R	A	V	V	M	N	S	.	.	G	P	I	I	F	S	E	D	L	P	P	Q	I	R
Query Conservation													.	.
Alig confidence													.	.
Template Conservation
Template Sequence		D	V	L	D	R	L	D	K	A	S	X	V	H	Q	R	K	L	T	I	P	F	V	K	E	X	L	R
Template Known Secondary structure															T													T
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions