Job Description Q06065 Confidence 99.40% Date Thu Jan 5 12:33:23 GMT 2012 Rank 141 Aligned Residues 233 % Identity 13% Template c2z4rB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: crystal structure of domain iii from the thermotoga2 maritima replication initiation protein dnaa Resolution 3.05 Å

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		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150			.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																		.	.																																												.	.
Query SS confidence																		.	.																																												.	.
Query Sequence		A	L	S	T	S	W	Q	W	G	H	I	L	T	N	S	P	.	.	A	M	M	D	I	C	K	D	T	A	K	I	A	L	S	Q	A	S	V	L	I	S	G	E	S	G	T	G	K	E	L	I	A	R	A	I	H	Y	N	S	R	R	A	.	.	K	G	P	F	I	K	V	N	C	A	A	L	P	E	S	L	L
Query Conservation																		.	.																																												.	.
Alig confidence																		.	.																																												.	.
Template Conservation
Template Sequence		P	L	N	P	D	Y	T	F	E	N	F	V	V	G	P	G	N	S	F	A	Y	H	A	A	L	E	V	A	K	H	P	G	R	Y	N	P	L	F	I	Y	G	G	V	G	L	G	K	T	H	L	L	Q	S	I	G	N	Y	V	V	Q	N	E	P	D	L	R	V	M	Y	I	T	S	E	K	F	L	N	D	L	V
Template Known Secondary structure					S	S		S	G	G	G					T	T	T													S	T	T	T	S								S	S	S	S	S																S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	Q	T	L	R	Q	G	L	F	E	R	A	N	E	G	T	L	L	L	D	E	I	G	E	M	P	L	V	L	Q	A	K	L	L	R	I	L	Q	E	R	E	F	E	R	I	G	G	H	Q	T	I	K	V	D	I	R	I	I	A	A	T	N	R	D	L	Q
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.
Template Sequence		D	S	M	K	.	.	.	.	.	.	.	.	.	E	G	K	L	N	E	F	R	E	K	Y	R	K	K	V	D	I	L	L	I	D	D	V	Q	F	L	I	G	K	T	G	V	Q	T	E	L	F	H	T	F	.	.	.	.	.	.	.	.	N	E	L	H	D	S	G	K	Q	I	V	I	C	S	D	R	E	P	Q
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	T	S										T	T	T		S							G	G	G	G	T	T													.	.	.	.	.	.	.	.					T	T	T								S	S		T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.
Template SS confidence
		177	.	.	180										.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220									.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	V	K	E	G	T	F	R	E	D	L	F	Y	R	L	N	V	I	H	L	I	L	P	P	L	R	D	R	R	E	D	I	S	L	L	A	N	H	F	L	Q	K	F	S	S	E	N	Q	R	D	I	I	D	I	D	P	M	A	M	S	L	L	T	A	W	S	W	P	G	N	I	R	E	L	S	N	V	I	E
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.																	.
Template Sequence		K	L	S	E	F	Q	D	R	L	V	S	R	F	Q	M	G	L	V	A	K	L	E	P	P	D	E	E	T	R	K	S	I	A	R	K	M	L	E	I	.	.	.	.	.	.	.	.	.	.	.	E	H	G	E	L	P	E	E	V	L	N	F	V	A	E	N	.	V	D	D	N	L	R	R	L	R	G	A	I	I
Template Known Secondary structure		T		S	S											S	S																								.	.	.	.	.	.	.	.	.	.	.		T					T	T									.			S
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.																	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.												.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.
		371	.	.	.			.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		R	A	V	V	.	.	M	N	S	G	P	I	I	F	S	E	D	L	P	P	Q	I	R	Q	P	V	C	N
Query Conservation						.	.
Alig confidence						.	.
Template Conservation
Template Sequence		K	L	L	V	Y	K	E	T	T	G	K	E	V	D	L	K	E	A	I	L	L	L	K	D	F	I	K	P
Template Known Secondary structure										S	S	S											T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions