Job Description Q06065 Confidence 98.67% Date Thu Jan 5 12:33:23 GMT 2012 Rank 187 Aligned Residues 247 % Identity 17% Template c2v1uA_ PDB info PDB header:replication Chain: A: PDB Molecule:cell division control protein 6 homolog; PDBTitle: structure of the aeropyrum pernix orc1 protein in complex2 with dna Resolution 3.10 Å

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		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.							190	.	.	.	.	.	.
Predicted Secondary structure																																														.	.																						.	.	.	.	.	.
Query SS confidence																																														.	.																						.	.	.	.	.	.
Query Sequence		M	K	K	E	I	R	H	L	H	Q	A	L	S	T	S	W	Q	W	G	H	I	L	T	N	S	P	A	M	M	D	I	C	K	D	T	A	K	I	A	L	S	Q	A	S	.	.	V	L	I	S	G	E	S	G	T	G	K	E	L	I	A	R	A	I	H	Y	N	.	.	.	.	.	.	S	R	R	A	K	G	P
Query Conservation																																														.	.																						.	.	.	.	.	.
Alig confidence																																														.	.																						.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	S	K	I	F	R	K	R	W	V	L	L	P	D	Y	V	P	D	V	L	P	H	R	E	A	E	L	R	R	L	A	E	V	L	A	P	A	L	R	G	E	K	P	S	N	A	L	L	Y	G	L	T	G	T	G	K	T	A	V	A	R	L	V	L	R	R	L	E	A	R	A	S	S	L	G	V	L	V	K
Template Known Secondary structure					S	S	B	S						S	T	T				S			T	T											T	T	G	G	G	T	S	S										B		T	T	S	S																				T
Template Predicted Secondary structure
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.										.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.																						.
Query SS confidence																																		.	.	.	.	.	.	.	.	.																						.
Query Sequence		F	I	K	V	N	C	A	A	L	P	E	S	L	L	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	Q	T	L	.	.	.	.	.	.	.	.	.	R	Q	G	L	F	E	R	A	N	E	G	T	L	L	L	D	E	I	G	E	M	.	P	L	V	L	Q	A	K	L	L	R	I	L	Q	E	R	E	F
Query Conservation																																		.	.	.	.	.	.	.	.	.																						.
Alig confidence																																		.	.	.	.	.	.	.	.	.																						.															.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		P	I	Y	V	N	A	R	H	R	E	T	P	Y	R	V	A	S	A	I	A	E	A	V	G	V	R	V	P	F	T	G	L	S	V	G	E	V	Y	E	R	L	V	K	R	L	S	R	L	R	G	I	Y	I	I	V	L	D	E	I	D	F	L	P	K	R	P	G	G	Q	D	L	L	Y	R	I	T	R	.	.	.
Template Known Secondary structure							T	T	T	S		S													S					S	S																T	T	S		S								T	T	T					S	T	T											.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	I	G	G	H	Q	T	I	K	V	D	I	R	I	I	A	A	T	N	R	D	L	Q	A	M	V	K	E	G	T	F	R	E	D	L	F	Y	R	L	N	V	I	H	L	I	L	P	P	L	R	D	R	R	E	D	I	S	L	L	A	N	H	F	L	Q	K	F	S	S	E	N	Q	R	D	I	I	D	I	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.																.	.	.	.																											.	.																.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																.	.	.	.																											.	.																.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	I	N	Q	E	L	V	S	L	V	G	I	T	N	S	L	.	.	.	.	G	F	V	E	N	L	E	P	R	V	K	S	S	L	G	E	V	E	L	V	F	P	P	Y	T	A	.	.	P	Q	L	R	D	I	L	E	T	R	A	E	E	A	F	.	.	.	.	.	N	P	G	V	L	D
Template Known Secondary structure		.	.	.	.	.	.	.	G	G	G										S		S	.	.	.	.	T	T	S	S	S	S						T	T	T	T	S					B						.	.															B	.	.	.	.	.		T	T	T	B
Template Predicted Secondary structure		.	.	.	.	.	.	.																.	.	.	.																											.	.																.	.	.	.	.
Template SS confidence
									170	.	.	.	.	.	.	.	.	.	180	.	.	.	.					.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210			.	.	.	.	.	.	.	.	.	220	.	.	.	.	.						.	.	.	.	230	.
		347	.	.	350	.	.	.			.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.				.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure									.	.																								.	.	.
Query SS confidence									.	.																								.	.	.
Query Sequence		P	M	A	M	S	L	L	.	.	T	A	W	S	W	P	G	N	I	R	E	L	S	N	V	I	E	R	A	V	V	M	N	.	.	.	S	G	P	I	I	F	S	E	D	L	P	P	Q	I	R	Q
Query Conservation									.	.																								.	.	.
Alig confidence									.	.																								.	.	.
Template Conservation
Template Sequence		P	D	V	V	P	L	C	A	A	L	A	A	R	E	H	G	D	A	R	R	A	L	D	L	L	R	V	A	G	E	I	A	E	R	R	R	E	E	R	V	R	R	E	H	V	Y	S	A	R	A	E
Template Known Secondary structure		S	S											S	S	S																				T	T		S		B
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions