Job Description Q06065 Confidence 93.23% Date Thu Jan 5 12:33:23 GMT 2012 Rank 288 Aligned Residues 133 % Identity 14% Template c2gnoA_ PDB info PDB header:replication Chain: A: PDB Molecule:dna polymerase iii, gamma subunit-related protein; PDBTitle: crystal structure of a dna polymerase iii, gamma subunit-related2 protein (tm0771) from thermotoga maritima msb8 at 2.00 a resolution Resolution 2.00 Å

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		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.				.	.	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																																	.	.	.								.	.
Query SS confidence																																																	.	.	.								.	.
Query Sequence		P	A	M	M	D	I	C	K	D	T	A	K	I	A	L	S	Q	A	S	V	L	I	S	G	E	S	G	T	G	K	E	L	I	A	R	A	I	H	Y	N	S	R	R	A	K	G	P	.	.	.	F	I	K	V	N	C	A	.	.	A	L	P	E	S	L	L	E	S	E	L	F	G	H	E	K	G	A	F	T	G
Query Conservation																																																	.	.	.								.	.
Alig confidence																.	.																																.	.	.								.	.												.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.																																																							.	.	.	.	.	.	.	.	.	.
Template Sequence		D	Q	L	E	T	L	K	R	I	I	E	K	S	E	.	.	G	I	S	I	L	I	N	G	E	D	L	S	Y	P	R	E	V	S	L	E	L	P	E	Y	V	E	K	F	P	P	K	A	S	D	V	L	E	I	D	P	E	G	E	N	I	G	I	D	D	I	R	T	I	K	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													T		S	.	.	S								S	S	S	S															T	S				T	T	T							S	S	S		B										.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.																																																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.			.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	T	L	R	Q	G	L	F	E	R	A	N	E	G	T	L	L	L	D	E	I	G	E	M	P	L	V	L	Q	A	K	L	L	R	I	L	Q	E	R	E	F	E	R	I	G	G	H	Q	T	I	K	V	D	I	R	I	I	A	A	T	N	R	D	L	Q	A	M	V	K	E	G	T	F	R	E	D	L	F	Y
Query Conservation
Alig confidence		.	.																																						.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.
Template Conservation		.	.																																						.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.
Template Sequence		.	.	D	F	L	N	Y	S	P	E	L	Y	T	R	K	Y	V	I	V	H	D	C	E	R	X	T	Q	Q	A	A	N	A	F	L	K	A	L	E	E	.	.	.	.	.	.	.	.	.	.	.	P	P	E	Y	A	V	I	V	L	N	T	R	R	W	.	.	.	.	.	.	.	H	Y	L	L	P	T	I	K	S
Template Known Secondary structure		.	.				T	S			S	S	S	S	S						T	T	G	G	G	B								T						S	.	.	.	.	.	.	.	.	.	.	.			T	T								S		G	.	.	.	.	.	.	.	G	G	S						T
Template Predicted Secondary structure		.	.																																						.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.
Template SS confidence
				79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.												.	.	.	.	120	.	.	.	.	.	.	.	.	.								130	.	.	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	N	V	I	H	L	I	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	V	F	R	V	V	V	N	V	P
Template Known Secondary structure		T	S
Template Predicted Secondary structure
Template SS confidence
		139	140	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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