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Job DescriptionQ06065
Confidence98.62%DateThu Jan 5 12:33:23 GMT 2012
Rank194Aligned Residues201
% Identity18%Templatec2chvE_
PDB info PDB header:dna-binding proteinChain: E: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c adpnp complex
Resolution4.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   138.140.........150.........160.........170.........180......... 190.........200.........210.....
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Query Sequence  TSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYN. . SRRAKGPFIKVNCAALPESLLESELF
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Template Sequence  RPRTLDEVVGQDEVIQRLKGYVER. . KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKI
Template Known Secondary structure 

SSGGG

S
GGGTTT..T





TTSSTT

TTT
TTSTTSTTTSS
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   12.......20.........30..... ....40.........50.........60.........70.........80.........
 
   216...220.........230.........240.........250.........260.........270.........280.........290.....
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Query Sequence  GHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKE
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Template Sequence  KEFARTAP. . . . . . . . . IGGAPFKIIFLDEADALTADAQAALRRTM. . . . . . . . . . . EMYSKSCRFILSCNYV. . . . . . .
Template Known Secondary structure  S

.........TTT


TGGGS
TTGGGT...........SSSSSSS
G.......
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   90....... ..100.........110.........120...... ...130.........140..
 
   296...300.........310.........320.........330.........340.........350.........360.........370.....
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Query Sequence  GTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM
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Template Sequence  SRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEK. . . . . . . . . . . EGVKITEDGLEALIYISG. GDFRKAINALQGAAAI
Template Known Secondary structure  GGS
TT





T...........TT

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   143......150.........160.........170...... ...180.........190.... .....200.........210
 
   376...
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Query Sequence  NSGP
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Template Conservation      
Template Sequence  GEVV
Template Known Secondary structure  SS
B
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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