Job Description Q06065 Confidence 99.04% Date Thu Jan 5 12:33:23 GMT 2012 Rank 162 Aligned Residues 210 % Identity 17% Template c2chgB_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c domains 1 and 2 Resolution 2.1 Å

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		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		T	S	W	Q	W	G	H	I	L	T	N	S	P	A	M	M	D	I	C	K	D	T	A	K	I	A	L	S	Q	A	S	V	L	I	S	G	E	S	G	T	G	K	E	L	I	A	R	A	I	.	.	H	Y	N	S	R	R	A	K	G	P	F	I	K	V	N	C	A	A	L	P	E	S	L	L	E	S	E	L	F
Query Conservation																																																			.	.
Alig confidence																									.	.																									.	.
Template Conservation																									.	.
Template Sequence		R	P	R	T	L	D	E	V	V	G	Q	D	E	V	I	Q	R	L	K	G	Y	V	E	.	.	R	K	N	I	P	H	L	L	F	S	G	P	P	G	T	G	K	T	A	T	A	I	A	L	A	R	D	L	F	G	E	N	W	R	D	N	F	I	E	M	N	A	S	D	E	R	G	I	D	V	V	R	H	K	I
Template Known Secondary structure		S		S	S	G	G	G			S														.	.	T	T									S		T	T	S	S														G	G	G	T	G	G	G						T	T		T	T
Template Predicted Secondary structure																									.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	E	K	G	A	F	T	G	A	Q	T	L	R	Q	G	L	F	E	R	A	N	E	G	T	L	L	L	D	E	I	G	E	M	P	L	V	L	Q	A	K	L	L	R	I	L	Q	E	R	E	F	E	R	I	G	G	H	Q	T	I	K	V	D	I	R	I	I	A	A	T	N	R	D	L	Q	A	M	V	K	E
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Template Sequence		K	E	F	A	R	T	A	P	.	.	.	.	.	.	.	.	.	I	G	G	A	P	F	K	I	I	F	L	D	E	A	D	A	L	T	A	D	A	Q	A	A	L	R	R	T	M	.	.	.	.	.	.	.	.	.	.	.	E	M	Y	S	K	S	C	R	F	I	L	S	C	N	Y	.	.	.	.	.	.	.	V
Template Known Secondary structure						T	S			.	.	.	.	.	.	.	.	.	S	T	T		S								T	G	G	G	S													.	.	.	.	.	.	.	.	.	.	.				T	T	T								S		.	.	.	.	.	.	.	G
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.										.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.												.	.	.	130	.	.	.	.	.	.	.	.	.	140	.								.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	F	R	E	D	L	F	Y	R	L	N	V	I	H	L	I	L	P	P	L	R	D	R	R	E	D	I	S	L	L	A	N	H	F	L	Q	K	F	S	S	E	N	Q	R	D	I	I	D	I	D	P	M	A	M	S	L	L	T	A	W	S	W	P	G	N	I	R	E	L	S	N	V	I	E	R	A	V	V	M
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.																		.	.	.															.																.	.
Template Conservation																						.	.	.	.	.	.	.	.																		.	.	.															.																.	.
Template Sequence		S	R	I	I	E	P	I	Q	S	R	C	A	V	F	R	F	K	P	V	P	.	.	.	.	.	.	.	.	K	E	A	M	K	K	R	L	L	E	I	C	E	K	E	G	V	.	.	.	K	I	T	E	D	G	L	E	A	L	I	Y	I	S	.	G	G	D	F	R	K	A	I	N	A	L	Q	G	A	A	.	.
Template Known Secondary structure		G	G	S							T											.	.	.	.	.	.	.	.																T		.	.	.															.	T	T														.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.																		.	.	.															.																.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.									.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.				180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	G	P	I	I	F	S	E	D	L	P	P	Q	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	G	E	V	V	D	A	D	T	I	Y	Q	I	T
Template Known Secondary structure		T	T		S
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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