Job Description Q06065 Confidence 97.56% Date Thu Jan 5 12:33:23 GMT 2012 Rank 219 Aligned Residues 263 % Identity 13% Template c1xxiF_ PDB info PDB header:transferase Chain: F: PDB Molecule:dna polymerase iii, delta subunit; PDBTitle: adp bound e. coli clamp loader complex Resolution 4.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		152	.	.	.			.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure						.	.															.																												.	.
Query SS confidence						.	.															.																												.	.
Query Sequence		M	M	D	I	.	.	C	K	D	T	A	K	I	A	L	S	Q	A	S	V	.	L	I	S	G	E	S	G	T	G	K	E	L	I	A	R	A	I	H	Y	N	S	R	R	A	K	G	P	.	.	F	I	K	V	N	C	A	A	L	P	E	S	L	L	E	S	E	L	F	G	H	E	K	G	A	F	T	G	A	Q
Query Conservation						.	.															.																												.	.
Alig confidence						.	.															.																												.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	I	R	L	Y	P	E	Q	L	R	A	Q	L	N	E	G	L	R	A	A	Y	L	L	L	G	N	D	P	L	L	L	Q	E	S	Q	D	A	V	R	Q	V	A	A	A	Q	G	F	E	E	H	H	T	F	S	I	D	P	N	T	D	W	N	A	I	F	S	L	C	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T	T											S							S																				T										S	S												.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	R	Q	G	L	F	E	R	A	N	E	G	T	L	L	L	D	E	I	G	E	M	P	L	V	L	Q	A	K	L	L	R	I	L	Q	E	R	E	F	E	R	I	G	G	H	Q	T	I	K	V	D	I	R	I	I	A	A	T	N	R	D	L	Q	A	M	V	K	E	G	T	F	R	E	D	L	F	Y	R	L
Query Conservation
Alig confidence		.							.	.																												.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Conservation		.							.	.																												.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Sequence		.	Q	A	M	S	L	F	.	.	A	S	R	Q	T	L	L	L	L	L	P	E	N	G	P	N	A	A	I	N	E	Q	L	L	T	L	T	.	.	.	.	.	.	.	.	.	.	G	L	L	H	D	D	L	L	L	I	V	R	G	N	K	L	.	.	.	.	.	S	K	A	Q	E	N	A	A	W	F	T	A	L
Template Known Secondary structure		.						S	.	.		S	S									S	S		S		T	T										.	.	.	.	.	.	.	.	.	.	T	T			S	S								S			.	.	.	.	.		T	T	T	T	T	S
Template Predicted Secondary structure		.							.	.																												.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template SS confidence
			69	70	.	.	.	.			.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.											.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.						.	.	120	.	.	.	.	.	.	.	.	.	130
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	I	H	L	I	L	P	P	L	R	D	R	R	E	D	I	S	L	L	A	N	H	F	L	Q	K	F	S	S	E	N	Q	R	D	I	I	D	I	D	P	M	A	M	S	L	L	T	A	W	S	W	P	G	N	I	R	E	L	S	N	V	I	E	R	A	V	V	M	N	S	G	P	I	I	F	S	E	D	L
Query Conservation
Alig confidence																													.	.	.	.	.	.	.																		.
Template Conservation																													.	.	.	.	.	.	.																		.
Template Sequence		A	N	R	S	V	Q	V	T	C	Q	T	P	E	Q	A	Q	L	P	R	W	V	A	A	R	A	K	Q	.	.	.	.	.	.	.	L	N	L	E	L	D	D	A	A	N	Q	V	L	C	Y	C	Y	.	E	G	N	L	L	A	L	A	Q	A	L	E	R	L	S	L	L	W	P	D	G	K	L	T	L	P	R	V
Template Known Secondary structure		T	T	T											T	T													.	.	.	.	.	.	.	T	T														S	S	.	T	T																	T	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.																		.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.								.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.																					.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	P	Q	I	R	Q	P	V	C	N	A	G	E	V	K	T	A	P	V	G	E	R	N	L	K	E	E	I	K	R	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	I	I	M	E	V	L	E	Q	Q	E	G	N	R	T	R	T	A	L	M	L	G	I	S	R	R	A
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	Q	A	V	N	D	A	A	H	F	T	P	F	H	W	V	D	A	L	L	M	G	K	S	K	R	A	L	H	I	L	Q	Q	L	R	L	E	G	S	E	P	V	I	L	L	R	T	L	Q	R	E	L	L	L	L	V	N	L	K	R	Q	S	A	H	T	P	L	R	A	L	F	D	K	H	R	V	W	Q	N	R
Template Known Secondary structure																					T	T	S										T	S	S	T	T	T	T																						T		S	S	S	S										T			S	S
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		447	.	.	450	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	Y	K	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	G	M	M	G	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions