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Job DescriptionQ06065
Confidence98.89%DateThu Jan 5 12:33:23 GMT 2012
Rank169Aligned Residues199
% Identity18%Templatec1xwiA_
PDB info PDB header:protein transportChain: A: PDB Molecule:skd1 protein; PDBTitle: crystal structure of vps4b
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   141........150......... 160.........170.........180.........190.........200.........210
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Query Sequence  QWGHILTNSPAMMDICKDT. . . . . . . . . . AKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL
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Template Sequence  KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN. . NSTFFSISSSDLVS. . .
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GGGS
S

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   132.......140.........150.........160.........170.........180.........190.. .......200......
 
   211........220.........230.........240......... 250.........260.........270.........
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Query Sequence  ESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEM. . . . . . . . . . . PLVLQAKLLRILQEREFERIGGHQTIKVDI
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Template Sequence  . . . . . . KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG. . . . . . . . VGVDNDGI
Template Known Secondary structure  ......SS

S
TSSTTTGGG

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   207..210.........220.........230.........240.........250.........260.... .....270..
 
   280.........290.........300....... ..310.........320.........330.........340.........350........
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Query Sequence  RIIAATNRDLQAMVKEGTFREDLFYRLN. VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSW
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Template Sequence  LVLGATNIPW. . . . . . . VLDSAIRRRFEKRIYIPLPEPHARAA. . . . MFKLHLGT. . . . . . . TQNSLTEADFRELGRKTD
Template Known Secondary structure  S
TT.......TS
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   273......280.. .......290.........300........ .310...... ...320.........330....
 
   359360.........370......
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Query Sequence  PGNIRELSNVIERAVVMN
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Template Sequence  GYSGADISIIVRDALMQP
Template Known Secondary structure  T

T
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   335....340.........350..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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