Job Description Q06065 Confidence 98.45% Date Thu Jan 5 12:33:23 GMT 2012 Rank 202 Aligned Residues 201 % Identity 17% Template c1sxjE_ PDB info PDB header:replication Chain: E: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	W	Q	W	G	H	I	L	T	N	S	P	A	M	M	D	I	C	K	D	T	A	K	I	A	L	S	Q	A	S	V	L	I	S	G	E	S	G	T	G	K	E	L	I	A	R	A	I	H	Y	N	S	R	R	A	K	G	P	F	I	K	V	N	C	A	A	L	P	E	S	L	L	E	S	E	L	F	G	H
Query Conservation
Alig confidence																															.																							.	.	.																			.	.	.	.	.	.
Template Conservation																															.																							.	.	.																			.	.	.	.	.	.
Template Sequence		R	P	K	S	L	N	A	L	S	H	N	E	E	L	T	N	F	L	K	S	L	S	D	Q	P	R	D	L	P	.	H	L	L	L	Y	G	P	N	G	T	G	K	K	T	R	C	M	A	L	L	E	S	.	.	.	I	F	G	P	G	V	Y	R	N	V	V	S	S	P	Y	H	L	E	.	.	.	.	.	.	I
Template Known Secondary structure					S	G	G	G			S										T	T	T	T		T	T				.							S	T	T	S	S							T					.	.	.		S		T	T									S	S				.	.	.	.	.	.
Template Predicted Secondary structure																															.																							.	.	.																			.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.							.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		E	K	G	A	F	T	G	A	Q	T	L	R	Q	G	L	F	E	R	A	N	E	G	.	.	T	L	L	L	D	E	I	G	E	M	P	L	V	L	Q	A	K	L	L	R	I	L	Q	E	R	E	F	E	R	I	G	G	H	Q	T	I	K	V	D	I	R	I	I	A	A	T	N	R	D	L	Q	A	M	V	K	E
Query Conservation																								.	.
Alig confidence																								.	.																									.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.
Template Sequence		T	P	S	N	D	R	I	V	I	Q	E	L	L	K	E	V	A	Q	M	E	Q	R	Y	K	C	V	I	I	N	E	A	N	S	L	T	K	D	A	Q	A	A	L	R	R	T	M	E	K	.	.	.	.	.	.	.	.	.	.	.	Y	S	K	N	I	R	L	I	M	V	C	D	S	M	.	.	.	.	.	.	.
Template Known Secondary structure																		T	T	T	T											T	T	S	S															.	.	.	.	.	.	.	.	.	.	.	S	T	T	T								S		S	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.												.	.	.	.	.	150	.	.	.	.	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	F	R	E	D	L	F	Y	R	L	N	V	I	H	L	I	L	P	P	L	R	D	R	R	E	D	I	S	L	L	A	N	H	F	L	Q	K	F	S	S	E	N	Q	R	D	I	I	D	I	D	P	M	A	M	S	L	L	T	A	W	S	W	P	G	N	I	R	E	L	S	N	V	I	E	R	A	V	V	M
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.																				.	.														.
Template Conservation																						.	.	.	.	.	.	.	.																				.	.														.
Template Sequence		S	P	I	I	A	P	I	K	S	Q	C	L	L	I	R	C	P	A	P	S	.	.	.	.	.	.	.	.	D	S	E	I	S	T	I	L	S	D	V	V	T	N	E	R	I	Q	L	.	.	E	T	K	D	I	L	K	R	I	A	Q	A	S	.	N	G	N	L	R	V	S	L	L	M	L	E	S	M	A	L	N
Template Known Secondary structure			S	S						T	T	S										.	.	.	.	.	.	.	.																T				.	.			S											.	T	T										T					T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.																				.	.														.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.									.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		376	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	E
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		244	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions