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Job DescriptionQ06065
Confidence100.00%DateThu Jan 5 12:33:23 GMT 2012
Rank5Aligned Residues247
% Identity55%Templatec1ojlF_
PDB info PDB header:response regulatorChain: F: PDB Molecule:transcriptional regulatory protein zrar; PDBTitle: crystal structure of a sigma54-activator suggests the2 mechanism for the conformational switch necessary for3 sigma54 binding
Resolution3.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   144.....150.........160.........170.........180.........190.........200.........210.........220...
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Query Sequence  HILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFT
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Template Sequence  HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFT
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   140.........150.........160.........170.........180.........190.........200.........210.........
 
   224.....230.........240.........250.........260.........270.........280.........290.........300...
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Query Sequence  GAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLF
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Template Sequence  KR. . . REGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLY
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   223. .....230.........240.........250.........260.........270.........280.........290.........
 
   304.....310.........320.........330.........340.........350.........360.........370.........380...
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Query Sequence  YRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFS
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Template Sequence  YRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLTGEYISE
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   300.........310.........320.........330.........340.........350.........360.........370.........
 
   384.....390...
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Query Sequence  EDLPPQIRQP
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Template Sequence  RELPLAIAAT
Template Known Secondary structure  GGS
GGG


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   380.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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