Job Description P0ACR7 Confidence 47.00% Date Thu Jan 5 11:18:49 GMT 2012 Rank 359 Aligned Residues 181 % Identity 9% Template c3tmgA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi Resolution 1.90 Å

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		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	R	V	A	A	S	Q	T	I	S	A	H	L	I	P	Q	C	I	A	E	S	H	R	R	Y	P	D	I	Q	F	V	L	H	D	R	P	Q	Q	W	V	M	E	S	I	R	Q	G	D	V	D	F	G	I	V	I	D	P	G	P	V	G	D	L	Q	C	E	A	I	L	S	E	P	F	F	L	L	C	H	R
Query Conservation
Alig confidence																												.
Template Conservation																												.
Template Sequence		S	V	K	I	G	Y	V	N	W	G	G	E	T	A	A	T	N	V	L	K	V	V	F	E	K	M	.	G	Y	N	A	E	I	F	S	V	T	T	S	I	M	Y	Q	Y	L	A	S	G	K	I	D	G	T	V	S	S	W	V	P	T	A	D	K	F	Y	Y	E	K	L	K	T	K	F	V	D	L	G	A	N	Y
Template Known Secondary structure																											T	.	T																			T	T	S	S	S								T	T	T	T								G	G	G
Template Predicted Secondary structure																												.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		174	.						.	.	.	.	180	.	.	.	.	.	.	.	.	.								190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.					.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.															.	.	.	.	.	.	.																																						.	.	.	.											.
Query SS confidence				.	.	.	.	.															.	.	.	.	.	.	.																																						.	.	.	.											.
Query Sequence		D	S	.	.	.	.	.	A	L	A	V	E	D	Y	V	P	W	Q	A	L	Q	.	.	.	.	.	.	.	G	A	K	L	V	L	Q	D	Y	A	S	G	S	R	P	L	I	D	A	A	L	A	R	N	G	I	Q	A	N	I	V	Q	E	I	G	H	P	.	.	.	.	A	T	L	F	P	M	V	A	A	G	.
Query Conservation				.	.	.	.	.															.	.	.	.	.	.	.																																						.	.	.	.											.
Alig confidence				.	.	.	.	.															.	.	.	.	.	.	.																																						.	.	.	.											.
Template Conservation
Template Sequence		E	G	T	I	Q	G	F	V	V	P	S	Y	V	P	I	S	S	I	S	E	L	K	G	K	G	D	K	F	K	N	K	M	I	G	I	D	A	G	A	G	T	Q	I	V	T	E	Q	A	L	N	Y	Y	G	L	S	K	E	Y	E	L	V	P	S	S	E	S	V	M	L	A	S	L	D	S	S	I	K	R	N	E
Template Known Secondary structure												T	T	S				B	G	G	G	G	T	T		G	G	G	G	T	T						S	T	T														T	T		T	T	T	S																				T	T
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
				237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	I	G	I	S	I	L	P	A	L	A	L	P	L	P	E	G	S	P	L	V	V	K	R	I	T	P	V	V	E	R	Q	L	M	L	V	R	R	K	N
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		W	I	L	V	P	L	W	K	P	H	W	A	F	S	R	Y	D	I	K	F	L	D	D	P	D	L	I	M	G	G	I	E	S	V	H	T	L	V	R	L	G
Template Known Secondary structure										S		T					S						B		T	T		T	T		S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions