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Job DescriptionP0ACR7
Confidence100.00%DateThu Jan 5 11:18:49 GMT 2012
Rank5Aligned Residues286
% Identity17%Templatec3t1bB_
PDB info PDB header:transcriptionChain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: crystal structure of the full-length aphb n100e variant
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  YSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENHTGVRLLDRTTREVVLTDAGQQLALRLERLLDELNSTLR
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Template Sequence  MKLDDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTE
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   1........10.........20.........30.........40.........50.........60.........70.........80
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  DTGRMGQQLSGKVRVAASQTISAHLIPQCIAESHRRYPDIQFVLHDRPQQWVMESIRQGDVDFGIVIDPGPVGDLQCEAI
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Template Sequence  EITDECRGASGRIRISAPSELTKRMMMPMFNAFMEKYPDIHIELMMSNQ. . . . ADLDPTEWDVIFRVGPQRDSSLIARKI
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   81........90.........100.........110.........120......... 130.........140.........150......
 
   163......170.........180.........190.........200.........210.........220.........230.........240..
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Query Sequence  LSEPFFLLCHRDSALAVEDYVPWQALQGAKLVLQDYASGSRPLIDAALARNGIQANIVQEIGHPATLFPMVAAGIGISIL
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Template Sequence  GEVKDILVASPQYLSSHPQPTHAEELHQHQLLKGYPLLKWQL. TNSQGETVVNSDRGRFQASALNVVRSACSEGLGITLM
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SSGGGGGGS
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   158.160.........170.........180.........190......... 200.........210.........220.........230......
 
   243......250 .........260.........270.........280.........290...
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Query Sequence  PALALPLP. . EGSPLVVKRITPVVERQLMLVRRKNRSLSTAAEALWDVVRDQG
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Template Conservation 
            
               
              
   
    
Template Sequence  PDVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVIGYH
Template Known Secondary structure  GGGTTSS

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   237..240.........250.........260.........270.........280.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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