Job Description P0ACR7 Confidence 99.48% Date Thu Jan 5 11:18:49 GMT 2012 Rank 36 Aligned Residues 180 % Identity 18% Template c3onmB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator lrha; PDBTitle: effector binding domain of lysr-type transcription factor rovm from y.2 pseudotuberculosis Resolution 2.40 Å

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		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	R	V	A	A	S	Q	T	I	S	A	H	L	I	P	Q	C	I	A	E	S	H	R	R	Y	P	D	I	Q	F	V	L	H	D	R	P	Q	Q	W	V	M	E	S	I	R	Q	G	D	V	D	F	G	I	V	I	D	P	G	P	V	G	D	L	Q	C	E	A	I	L	S	E	P	F	F	L	L	C	H	R
Query Conservation
Alig confidence																													.																															.	.
Template Conservation																													.																															.	.
Template Sequence		S	L	I	I	G	A	S	D	D	T	A	D	T	L	L	P	F	L	L	N	R	V	A	T	L	Y	P	.	L	A	I	D	V	R	V	K	R	S	P	F	I	A	D	M	L	S	S	G	E	V	D	L	A	I	T	T	A	K	.	.	V	D	S	H	P	H	V	I	L	R	T	S	P	T	L	W	Y	C	S	V
Template Known Secondary structure													T	T	T									T	T	S			.										G	G	G							T	T	S		S					S	S		.	.		S	S	S																T
Template Predicted Secondary structure																													.																															.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.			.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	A	L	A	V	E	D	Y	V	P	W	Q	A	L	Q	G	A	K	L	V	L	Q	D	Y	A	S	G	S	R	P	L	I	D	A	A	L	A	R	N	G	I	Q	A	N	I	V	Q	E	I	G	H	P	A	T	L	F	P	M	V	A	A	G	I	G	I	S	I	L	P	A	L	A	L	P	L	P	E	G	S
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.
Template Sequence		D	Y	Q	F	Q	P	G	E	P	V	.	.	.	.	.	.	.	.	P	L	V	V	M	D	E	P	S	L	Y	R	E	M	A	I	E	H	L	T	Q	A	G	V	P	W	R	I	A	Y	V	A	S	S	L	S	A	I	R	A	A	V	R	A	G	L	G	V	T	A	R	P	I	E	M	M	S	P	D	L	R	V
Template Known Secondary structure		T					S	S	S			.	.	.	.	.	.	.	.						S	S	S														T	T										S	S										T	T	S		B					G	G	G			T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.									.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	V	V	K	R	I	T	P	V	V	E	R	Q	L	M	L	V	R	R	K	N	R	S	L	S	T	A	A	E	A	L
Query Conservation
Alig confidence																										.
Template Conservation																										.
Template Sequence		L	G	E	T	E	G	L	P	G	L	P	E	T	R	Y	V	L	C	K	D	K	Q	C	D	.	N	E	L	A	L	A	I
Template Known Secondary structure				G	G	G	T															S				.
Template Predicted Secondary structure																										.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions