Job Description P0ACR7 Confidence 69.03% Date Thu Jan 5 11:18:49 GMT 2012 Rank 281 Aligned Residues 201 % Identity 9% Template c3k2dA_ PDB info PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	L	S	G	K	V	R	V	A	A	S	Q	T	I	S	A	H	L	I	P	Q	C	I	A	E	S	H	R	R	Y	P	D	I	Q	F	V	L	H	D	R	P	Q	Q	W	V	M	E	S	I	R	Q	G	D	V	D	F	G	I	V	I	D	P	G	P	V	G	D	L	Q	C	E	A	I	L	S	E	P	F	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	M	D	T	S	K	V	K	V	G	V	M	A	G	A	E	A	Q	V	A	E	V	A	A	K	V	A	K	E	K	Y	G	L	D	V	E	L	V	T	F	T	D	Y	V	T	P	N	A	A	L	D	D	G	S	I	D	M	N	A	F	Q	H	K	P	Y	L	D	R	Q	V	E	D	R	D	Y	K	L	T	I	A
Template Known Secondary structure			S											T	T																											S		T	T	S								T	S		S
Template Predicted Secondary structure
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.																					.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																								.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	C	H	R	D	S	A	L	A	V	E	D	Y	V	P	W	Q	A	L	Q	G	.	A	K	L	V	L	Q	D	Y	A	S	G	S	R	P	L	I	D	A	A	L	A	R	N	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	N	I	V	Q	E	I	G	H	P	A
Query Conservation																								.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	N	T	F	V	Y	P	I	A	G	Y	S	K	Q	V	K	S	V	A	A	L	A	D	G	V	R	I	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	L	E	Q	Q	G	L	I	K	L	R	P	E	V	G	L	L	A	T	V	R	D	I	V	E	N	P	K	N	I	T	I	M	E	L	D	A	A	Q
Template Known Secondary structure														S	S		S		S	T	T			T	T								S														T	T	S					T	T			S	S			G	G	G					T	T									G	G	G
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	F	P	M	V	A	A	G	I	G	I	S	I	L	P	A	L	A	L	P	L	P	E	G	S	P	L	V	V	K	R	I	T	P	V	V	E	R	Q	L	M	L	V	R	R	K	N	R	S	L	S	T	A	A	E	A	L	W	D	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P	R	S	L	D	D	V	A	L	S	I	I	N	T	T	Y	A	S	S	I	N	L	T	P	E	K	D	G	V	F	V	E	D	K	E	S	P	Y	V	N	L	I	V	A	R	Q	D	N	V	Q	N	E	N	V	Q	N	F	V	K	A	Y
Template Known Secondary structure						T	T	T	S	S										G	G	G	T								S					S	S	S	S									T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions