Return to main results Retrieve Phyre Job Id

Job DescriptionP0ACR7
Confidence99.94%DateThu Jan 5 11:18:49 GMT 2012
Rank8Aligned Residues166
% Identity13%Templatec1b9nA_
PDB info PDB header:transcriptionChain: A: PDB Molecule:protein (mode); PDBTitle: regulator from escherichia coli
Resolution2.09 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
Predicted Secondary structure 













Query SS confidence 















































































Query Sequence  YSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENHTGVRLLDRTTREVVLTDAGQQLALRLERLLDELNSTLR
Query Conservation 
 
  
  
  
 
 

 
 

  
 






  
  

  

  

 
      

  
  
   
   
        
Alig confidence 

















































.




























Template Conservation     
 
  
 


  

 
 

  
 


 


  
  

  

  

 
.     

  
  

  
  

     
  
Template Sequence  ADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINEMNQLSEHILVER. ATGAVLTRYGQRLIQLYDLLAQIQQKAFD
Template Known Secondary structure 
SST

TS

.



Template Predicted Secondary structure 







.



Template SS confidence 















































































   17..20.........30.........40.........50.........60...... ...70.........80.........90.....
 
   83......90.........100... ......110.........120.........130.........140.........150........
Predicted Secondary structure 








....































Query SS confidence 




















. . . .






















































Query Sequence  DTGRMGQQLSGKVRVAASQTI. . . . SAHLIPQCIAESHRRYPDIQFVLHDRPQQWVMESIRQGDVDFGIVIDPGPVGDLQ
Query Conservation              
        ....                                  
     
  
           
Alig confidence 




















....























..........




















Template Conservation                               

  
           
 
 ..........
     

             
Template Sequence  VLSDDDALPLNSLLAAISRFSLQTSARNQWFGTITARDHDDVQQHVDVL. . . . . . . . . . LADGKTRLKVAITAQSGARLG
Template Known Secondary structure 

SS
TT
T


TTS


SSSS

S..........
TTS



TT
Template Predicted Secondary structure 


















..........









Template SS confidence 















































































   102.......110.........120.........130.........140.........150 .........160.........170.
 
   159160.........170.........
Predicted Secondary structure 
















Query SS confidence 




















Query Sequence  CEAILSEPFFLLCHRDSALAV
Query Conservation                       
Alig confidence 




















Template Conservation                       
Template Sequence  LDEGKEVLILLKAPWVGITQD
Template Known Secondary structure 

TT


GGG
S
Template Predicted Secondary structure 














Template SS confidence 




















   172.......180.........190..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions