Job Description P67697 Confidence 58.03% Date Thu Jan 5 12:10:47 GMT 2012 Rank 392 Aligned Residues 106 % Identity 11% Template c2q0oA_ PDB info PDB header:transcription Chain: A: PDB Molecule:probable transcriptional activator protein trar; PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing Resolution 2.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	V	T	L	T	P	A	P	E	G	G	Y	M	V	S	F	V	D	I	P	E	A	L	T	Q	G	E	T	V	A	E	A	M	E	A	A	K	D	A	L	L	T	A	F	D	F	Y	F	E	D	N	E	L	I	P	L	P	S	P	L	N	S	H	D	H	F	I	E	V	P	L	S	V	A	S	K	V	L	L
Query Conservation
Alig confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	T	I	P	V	E	G	S	Y	G	S	A	M	M	L	T	F	A	S	P	E	R	K	V	D	I	S	G	V	L	D	P	K	K	A	V	Q	L	L	M	M	V	H	Y	Q	L	K	I	I	A	A	K	T	V	L	N	P	K	Q	M	L	S	P	R	E	M	L	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									G	G	G										S	S	S					T	T	T	S																						T					G	G	G	S								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	A	F	L	Q	S	E	I	T	Q	Q	E	L	A	R	R	I	G	K	P	K	Q	E	I	T	R	L	F	N	L	H	H	A	T	K	I	D	A	V	Q	L	A	A	K	A	L	G	K	E
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	L	V	W	A	S	K	G	K	T	A	S	V	T	A	N	L	T	G	I	N	A	R	T	V	Q	H	Y	.	.	.	.	.	.	.	.	.	.	.	L	D	K	A	R	A	K	L	D	A	E
Template Known Secondary structure								T	T																					.	.	.	.	.	.	.	.	.	.	.									T		S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210												.	.	.	.	.	.	.	.	.	220	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions