Return to main results Retrieve Phyre Job Id

Job DescriptionP77366
Confidence98.72%DateThu Jan 5 12:28:14 GMT 2012
Rank97Aligned Residues122
% Identity19%Templatec3zvmA_
PDB info PDB header:hydrolase/transferase/dnaChain: A: PDB Molecule:bifunctional polynucleotide phosphatase/kinase; PDBTitle: the structural basis for substrate recognition by mammalian2 polynucleotide kinase 3' phosphatase
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70.........80...
Predicted Secondary structure 


























Query SS confidence 















































































Query Sequence  QGVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESLKGISRDESLRRILQHGGKEGDFNSQERAQLAYRKNLLYV
Query Conservation 
 



 



 
       
        
                                                  
Alig confidence 













..............................................................



Template Conservation 


 







  ..............................................................


 
Template Sequence  KVAAFDLDGTLITT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RSGK
Template Known Secondary structure  S
SBTTT
..............................................................SS

Template Predicted Secondary structure 




..............................................................



Template SS confidence 















































































   165....170........ .180..
 
   84.....90..... ....100.........110......... 120.........130.........140.........150
Predicted Secondary structure 






.









............















Query SS confidence 











.























. . . . . . . . . . . .






























Query Sequence  HSLRELTVNAVL. PGIRSLLADLRAQQISVGLASVSL. . . . . . . . . . . . NAPTILAALELREFFTFCADASQLKNSKPDP
Query Conservation              .      
                 ............                           
   
Alig confidence 











.























............






























Template Conservation   
     

      
   
  
   

 






 

  
         

  
   
  
     
      


  
Template Sequence  VFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRKPVS
Template Known Secondary structure  SS
SSTT

S
TTTT

TTSS
TS


SSSTTSTTS
Template Predicted Secondary structure 



































Template SS confidence 















































































   183......190.........200.........210.........220.........230.........240.........250.........260..
 
   151........160. ........170.. .......180.......
Predicted Secondary structure 

....



.................



Query SS confidence 










. . . .










. . . . . . . . . . . . . . . . .














Query Sequence  EIFLAACAGLG. . . . VPPQACIGIED. . . . . . . . . . . . . . . . . AQAGIDAINASGMRS
Query Conservation             ....  
   
 


.................   

 

  

   
Alig confidence 










....










.................














Template Conservation 

        
    

   
  






           
 
  
  

 
 
  
Template Sequence  GMWDHLQEQANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPF
Template Known Secondary structure  SSTT



STT

S


B
TT
BTTB
S

S

T

Template Predicted Secondary structure 































Template SS confidence 

























































   263......270.........280.........290.........300.........310.........320
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions