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Job DescriptionP77366
Confidence97.83%DateThu Jan 5 12:28:14 GMT 2012
Rank121Aligned Residues166
% Identity13%Templatec3bwvB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:putative 5'(3')-deoxyribonucleotidase; PDBTitle: crystal structure of deoxyribonucleotidase-like protein (np_764060.1)2 from staphylococcus epidermidis atcc 12228 at 1.55 a resolution
Resolution1.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60.........70.........80...
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Query Sequence  QGVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESLKGISRDESLRRILQHGGKEGDFNSQERAQLAYRKNLLYV
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Template Sequence  QRIAIDXDEVLADTLGAVVKAVNE. . . RADLNIKXESLNGKKLG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LVXDIL
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BTTTB
...TT



GGGGTTS


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   4.....10.........20....... ..30.........40.... .....50
 
   84.....90.........100.........110.........120.........130.........140.........150.........160...
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Query Sequence  HSLRELTVNAVLPGIRSLLADLRAQQISVGLASVSLNAPTILAALELREFFTFCADASQLKNSKPDPEIFLAACAGLGVP
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Template Sequence  KEPGFFRNLDVXPHAQEVVKQLNEHYDIYIATAAXDVPTSFHDKYEWLLEYFPFLDPQHFVFCGRK. . . . . . . . NIILAD
Template Known Secondary structure  STTTTTS

B
TTTTTS
SSSSGGG
TTS
GGG
SSG........GG


S
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   5960.........70.........80.........90.........100.........110.........120.... .....130
 
   164.....170.........180.........190.........200.........210.........
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Query Sequence  PQACIGIEDAQAGIDAINASGMRSVGIGAGLTGAQLLLPSTESLTWPRLSAFWQNV
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Template Sequence  . . . . YLIDDNPKQ. . . LEIFEGKSIXFTASHNVYEHRFERVSGW. . RDVKNYFNSI
Template Known Secondary structure  ....S
...TT
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GGGTT

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   131........ 140.........150.........160....... ..170.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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