Job Description P36999 Confidence 78.64% Date Thu Jan 5 11:54:09 GMT 2012 Rank 380 Aligned Residues 52 % Identity 23% Template c3trkA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:nonstructural polyprotein; PDBTitle: structure of the chikungunya virus nsp2 protease Resolution 2.40 Å

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		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.					.	.	.	.	160	.	.	.	.															.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	K	R	Y	P	Q	V	T	F	C	V	A	S	S	H	R	L	P	F	S	D	T	S	M	D	A	I	I	R	I	.	.	.	.	Y	A	P	C	K	A	E	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	V	V	K	P	G	G	W	V	I	T
Query Conservation																																	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	P	L	G	V	R	G	A	D	Y	T	Y	N	L	E	L	G	L	P	A	T	L	G	R	Y	D	L	V	V	I	N	I	H	T	P	F	R	I	H	H	Y	Q	Q	C	V	D	H	A	X	K	L	Q	X	L	G	G	D	S	L	R	L	L	K	P	G	G	S	L	L	I
Template Known Secondary structure				T	T		S	S		S					G	G	G				G	G	G																S	S																			G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions