Job Description P36999 Confidence 77.90% Date Thu Jan 5 11:54:09 GMT 2012 Rank 384 Aligned Residues 96 % Identity 21% Template c3pvcA_ PDB info PDB header:oxidoreductase, transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of apo mnmc from yersinia pestis Resolution 2.31 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.													.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.										.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.										.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	R	L	D	D	K	A	T	A	V	L	D	I	G	C	G	E	G	Y	Y	T	H	A	F	A	D	A	L	.	.	.	.	.	.	.	.	.	.	.	.	P	E	I	T	T	F	G	L	D	.	.	.	V	S	K	V	A	I	K	A	A	A	K	R	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.										.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.										.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	H	P	Q	Q	S	C	I	F	A	E	T	G	F	G	T	G	L	N	F	L	T	L	W	R	D	F	A	L	F	R	Q	Q	S	P	N	A	T	L	R	R	L	H	Y	I	S	F	E	K	Y	P	L	H	V	A	D	L	A	S	A	H	A	R	W	P	E	L	A	S	F	A	E	Q	L	R	A	Q	W	P
Template Known Secondary structure						S	S										T	T	S																		T	T	S	S											S	S												T	T		G	G	G										T
Template Predicted Secondary structure
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
																		131	.	.	.	.	.	.	.	.	140	.	.						.	.	.	.	.	.	.	150	.	.	.	.									.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.													.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.													.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	T	F	C	V	A	S	S	H	R	L	.	.	.	.	.	P	F	S	D	T	S	M	D	A	I	I	R	.	.	.	.	.	.	.	.	I	Y	A	P	C	K	A	E	E	L	A	R	V	V	K	P	G	G	W	V	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.													.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	L	A	G	C	H	R	I	L	L	A	D	G	A	I	T	L	D	L	W	F	G	D	V	N	T	L	L	P	T	L	D	D	S	L	N	N	Q	V	D	A	W	F	L	D	G	F	A	P	N	P	D	X	W	N	E	Q	L	F	N	A	X	A	R	X	T	R	P	G	G	T	F	S
Template Known Secondary structure					S								T	T	T	T								S						G	G	G			G	G	G	T	T									S	S					T	T		S
Template Predicted Secondary structure
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions