Job Description P36999 Confidence 70.95% Date Thu Jan 5 11:54:09 GMT 2012 Rank 406 Aligned Residues 88 % Identity 24% Template c3ps9A_ PDB info PDB header:transferase Chain: A: PDB Molecule:trna 5-methylaminomethyl-2-thiouridine biosynthesis PDBTitle: crystal structure of mnmc from e. coli Resolution 2.54 Å

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		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.													110	.	.	.	.	.	.				.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.								.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.								.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	L	D	I	G	C	G	E	G	Y	Y	T	H	A	F	A	D	A	L	P	E	.	.	.	.	.	.	.	.	.	.	.	.	I	T	T	F	G	L	D	.	.	.	V	S	K	V	A	I	K	A	A	A	K	R	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.								.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.								.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	A	E	S	G	F	G	T	G	L	N	F	L	T	L	W	Q	A	F	D	Q	F	R	E	A	H	P	Q	A	Q	L	Q	R	L	H	F	I	S	F	E	K	F	P	L	T	R	A	D	L	A	L	A	H	Q	H	W	P	E	L	A	P	W	A	E	Q	L	Q	A	Q	W	P	M	P	L	P	G	C	H	R
Template Known Secondary structure									T	T	S																		T	T	S	S											S	S												T	T		G	G	G																S
Template Predicted Secondary structure
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
										131	.	.	.	.	.	.	.	.	140	.	.						.	.	.	.	.	.	.	150	.	.	.	.											.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.													.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.													.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	Q	V	T	F	C	V	A	S	S	H	R	L	.	.	.	.	.	P	F	S	D	T	S	M	D	A	I	I	R	.	.	.	.	.	.	.	.	.	.	I	Y	A	P	C	K	A	E	E	L	A	R	V	V	K	P	G	G	W	V	I
Query Conservation		.	.	.	.	.	.	.	.													.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.													.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	L	D	A	G	R	V	T	L	D	L	W	F	G	D	I	N	E	L	T	S	Q	L	D	D	S	L	N	Q	K	V	D	A	W	F	L	D	G	F	A	P	A	K	N	P	D	M	W	T	Q	N	L	F	N	A	M	A	R	L	A	R	P	G	G	T	L	A
Template Known Secondary structure					G	G	G	T								S						G	G	G	B		G	G	G	T	T										S		G	G	G		G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions