Job Description P36999 Confidence 98.07% Date Thu Jan 5 11:54:09 GMT 2012 Rank 268 Aligned Residues 114 % Identity 18% Template c3k0bA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:predicted n6-adenine-specific dna methylase; PDBTitle: crystal structure of a predicted n6-adenine-specific dna methylase2 from listeria monocytogenes str. 4b f2365 Resolution 1.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.																																							.
Predicted Secondary structure																		.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	P	L	R	D	A	I	V	A	Q	L	R	E	R	L	D	.	D	K	A	T	A	V	L	D	I	G	C	G	E	G	Y	Y	T	H	A	F	A	D	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P
Query Conservation																		.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	P	I	K	E	T	X	A	A	A	L	V	L	L	T	S	W	H	P	D	R	P	F	Y	D	P	V	C	G	S	G	T	I	P	I	E	A	A	L	I	G	Q	N	I	A	P	G	F	N	R	E	F	V	S	E	T	W	D	W	X	P	K	Q	V	W	A	D	A	R	Q	E	A	E	D	L	A	N	Y	D	Q
Template Known Secondary structure			S													S				T	T	S					T	T		T	T	S											T	T			T	T	T	T	S			G	G	G	G		T	T	S																		T	T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.							130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.												.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.															.	.
Query SS confidence																							.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.															.	.
Query Sequence		E	I	T	T	F	G	L	D	V	S	K	V	A	I	K	A	A	A	K	R	Y	.	.	.	.	.	.	P	Q	V	T	F	C	V	A	S	S	H	R	L	P	F	S	D	T	S	M	D	A	I	I	R	I	.	.	.	.	.	.	.	.	.	.	.	Y	A	P	C	K	A	E	E	L	A	R	V	V	K	.	.
Query Conservation																							.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.															.	.
Alig confidence																							.	.	.	.	.	.															.												.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation																																											.
Template Sequence		P	L	N	I	I	G	G	D	I	D	A	R	L	I	E	I	A	K	Q	N	A	V	E	A	G	L	G	D	L	I	T	F	R	Q	L	Q	V	A	D	F	Q	.	T	E	D	E	Y	G	V	V	V	A	N	P	P	Y	G	E	R	L	E	D	E	E	A	V	R	Q	L	Y	R	E	X	G	I	V	Y	K	R	X
Template Known Secondary structure										S															T	T		T	T		S							G	G	G			.					S												S																				T
Template Predicted Secondary structure																																											.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	G	W	V	I	T	A	T	P	G	P	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	T	W	S	V	Y	V	L	T	S	Y	E	L
Template Known Secondary structure		T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions