Job Description P36999 Confidence 93.43% Date Thu Jan 5 11:54:09 GMT 2012 Rank 325 Aligned Residues 108 % Identity 22% Template c2qy6A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0209 protein yfck; PDBTitle: crystal structure of the n-terminal domain of upf0209 protein yfck2 from escherichia coli o157:h7 Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		68	.	70	.	.	.	.	.	.	.	.	.	80									.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.													110	.	.	.	.	.	.				.	.	.	120	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.								.	.	.
Query SS confidence															.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.								.	.	.
Query Sequence		Q	P	L	R	D	A	I	V	A	Q	L	R	E	.	.	.	.	.	.	.	.	R	L	D	D	K	A	T	A	V	L	D	I	G	C	G	E	G	Y	Y	T	H	A	F	A	D	A	L	P	E	.	.	.	.	.	.	.	.	.	.	.	.	I	T	T	F	G	L	D	.	.	.	V	S	K	V	A	I	K	A
Query Conservation															.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.								.	.	.
Alig confidence															.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.								.	.	.
Template Conservation
Template Sequence		N	G	L	E	E	T	R	Y	V	F	L	G	G	N	Q	L	E	A	R	F	P	E	H	P	H	P	L	F	V	V	A	E	S	G	F	G	T	G	L	N	F	L	T	L	W	Q	A	F	D	Q	F	R	E	A	H	P	Q	A	Q	L	Q	R	L	H	F	I	S	F	E	K	F	P	L	T	R	A	D	L	A	L
Template Known Secondary structure		T													T	T					G	G	G		S	S	S							S			T	T	S																		T	T	S	S											S	S
Template Predicted Secondary structure
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		125	.	.	.	.	130																													.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.					.	150	.	.	.	.											.	.	.	.	.	160	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.								.	.	.	.							.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.								.	.	.	.							.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	K	R	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	T	F	C	V	A	S	S	H	R	.	L	P	F	S	D	T	S	.	.	.	.	M	D	A	I	I	R	.	.	.	.	.	.	.	.	.	.	I	Y	A	P	C	K	A
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.								.	.	.	.							.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.								.	.	.	.							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	H	Q	H	W	P	E	L	A	P	W	A	E	Q	L	Q	A	Q	W	P	M	P	L	P	G	C	H	R	L	L	L	D	R	V	T	L	D	L	W	F	G	D	I	N	E	L	I	S	Q	L	D	D	S	L	N	Q	K	V	D	A	W	F	L	D	G	F	A	P	A	K	N	P	D	M	W	T	Q	N	L	F
Template Known Secondary structure				T	T		G	G	G										T				S		S																	S						G	G	G	S		G	G	G	T	T									S	S		T	T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	L	A	R	V	V	K	P	G	G	W	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	A	M	A	R	L	A	R	P	G	G	T	L	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions