Job Description P0AE88 Confidence 99.82% Date Thu Jan 5 11:22:47 GMT 2012 Rank 82 Aligned Residues 194 % Identity 14% Template c3klnC_ PDB info PDB header:transcription Chain: C: PDB Molecule:transcriptional regulator, luxr family; PDBTitle: vibrio cholerae vpst Resolution 3.08 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.					.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.			.	70	.	.	.	.
Predicted Secondary structure																																											.	.	.	.																												.	.
Query SS confidence																																											.	.	.	.																												.	.
Query Sequence		M	N	K	I	L	L	V	D	D	D	R	E	L	T	S	L	L	K	E	L	L	E	M	E	G	F	N	V	I	V	A	H	D	G	E	Q	A	L	D	L	L	.	.	.	.	D	D	S	I	D	L	L	L	L	D	V	M	M	P	K	K	N	G	I	D	T	L	K	A	L	R	Q	.	.	T	H	Q	T	P	V
Query Conservation																																											.	.	.	.																												.	.
Alig confidence																																											.	.	.	.																												.	.
Template Conservation
Template Sequence		K	L	N	V	R	M	L	S	D	V	C	M	Q	S	R	L	L	K	E	A	L	E	S	K	L	P	L	A	L	E	I	T	P	F	S	E	L	W	L	E	E	N	K	P	E	S	R	S	I	Q	M	L	V	I	D	Y	S	R	I	S	D	D	V	L	T	D	Y	S	S	F	K	H	I	S	C	P	D	A	K	E
Template Known Secondary structure		S							S			S														S	S								G	G	G	G	G	G	T	T	T		S	G	G	G	G								G	G	G			T	T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	M	L	T	A	R	G	S	E	L	D	R	V	L	G	L	E	L	G	A	D	D	Y	L	P	K	P	F	N	D	R	E	L	V	A	R	I	R	A	I	L	R	R	S	H	W	S	E	Q	Q	Q	N	N	D	N	G	S	P	T	L	E	V	D	A	L	V	L	N	P	G	R	Q	E	A	S	F	D	G	Q	T
Query Conservation
Alig confidence																																																													.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.
Template Sequence		V	I	I	N	C	P	Q	D	I	E	H	K	L	L	F	K	W	N	N	L	A	G	V	F	Y	I	D	D	D	M	D	T	L	I	K	G	M	S	K	I	L	Q	D	E	M	W	L	T	R	K	L	A	Q	E	Y	I	L	H	Y	.	.	.	.	.	.	.	.	.	R	A	G	N	S	V	V	T	S	Q	M	Y
Template Known Secondary structure								S	S			G	G	G	G	G	G	S	T	T							T	T															T	T			B														.	.	.	.	.	.	.	.	.			T							T	T	G
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.										.	.	.	.	.	150	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	L	T	G	T	E	F	T	L	L	Y	L	L	A	Q	H	L	G	Q	V	V	S	R	E	H	L	S	Q	E	V	L	G	K	R	L	T	P	F	D	R	A	I	D	M	H	I	S	N	L	R	R	K	L	P	D	R	K
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.
Template Sequence		A	K	L	T	K	R	E	Q	Q	I	I	K	L	L	G	S	G	A	S	.	.	.	.	.	.	.	.	.	N	I	E	I	A	D	K	L	F	V	S	E	N	T	V	K	T	H	L	H	N	V	F	K	K	I	N	A	K	N
Template Known Secondary structure		G	G	S													T	T			.	.	.	.	.	.	.	.	.						T	T	T	T																		T		S	S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.										.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions