Job Description P0AE88 Confidence 100.00% Date Thu Jan 5 11:22:47 GMT 2012 Rank 6 Aligned Residues 213 % Identity 30% Template c1p2fA_ PDB info PDB header:transcription Chain: A: PDB Molecule:response regulator; PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		M	N	K	I	L	L	V	D	D	D	R	E	L	T	S	L	L	K	E	L	L	E	M	E	G	F	N	V	I	V	A	H	D	G	E	Q	A	L	D	L	L	D	D	S	I	D	L	L	L	L	D	V	M	M	P	K	K	N	G	I	D	T	L	K	A	L	R	Q	.	T	H	Q	T	P	V	I	M	L	T	A
Query Conservation																																																																						.
Alig confidence																												.													.																													.
Template Conservation																												.													.
Template Sequence		X	W	K	I	A	V	V	D	D	D	K	N	I	L	K	K	V	S	E	K	L	Q	Q	L	G	R	.	V	K	T	F	L	T	G	E	D	F	L	N	.	D	E	E	A	F	H	V	V	V	L	D	V	X	L	P	D	Y	S	G	Y	E	I	C	R	X	I	K	E	T	R	P	E	T	W	V	I	L	L	T	L
Template Known Secondary structure										S													T	T	T			.					S	S							.			S			S						S	B		S	S	S	B													T	T	S							S
Template Predicted Secondary structure																												.													.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	S	E	L	D	R	V	L	G	L	E	L	G	A	D	D	Y	L	P	K	P	F	N	D	R	E	L	V	A	R	I	R	A	I	L	R	R	S	H	W	S	E	Q	Q	Q	N	N	D	N	G	S	P	T	L	E	V	D	A	L	V	L	N	P	G	R	Q	E	A	S	F	D	G	Q	T	L	E	L	T	G
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	D	D	E	S	V	L	K	G	F	E	A	G	A	D	D	Y	V	T	K	P	F	N	P	E	I	L	L	A	R	V	K	R	F	L	E	R	E	K	K	G	L	Y	D	F	.	.	.	.	.	.	.	.	.	.	.	G	D	L	K	I	D	A	T	G	F	T	V	F	L	K	G	K	R	I	H	L	P	K
Template Known Secondary structure				S											T		S					S	S																				S					.	.	.	.	.	.	.	.	.	.	.	T	T					T	T	T	T					T	T
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.												.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	F	T	L	L	Y	L	L	A	Q	H	L	G	Q	V	V	S	R	E	H	L	S	Q	E	V	L	G	K	R	L	T	P	F	D	R	A	I	D	M	H	I	S	N	L	R	R	K	L	P	D	R	K	D	G	H	P	W	F	K	T	L	R	G	R	G	Y	L	M
Query Conservation
Alig confidence																															.	.
Template Conservation																															.	.
Template Sequence		K	E	F	E	I	L	L	F	L	A	E	N	A	G	K	V	V	T	R	E	K	L	L	E	T	F	W	E	D	.	.	P	V	S	P	R	V	V	D	T	V	I	K	R	I	R	K	A	I	E	D	D	P	N	R	P	R	Y	I	K	T	I	W	G	V	G	Y	X	F
Template Known Secondary structure													T	T	T	S													S	S	.	.				T																S	S	T	T	S		S	S					T	T	T
Template Predicted Secondary structure																															.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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