 |
Job Description | P12999 | Confidence | 51.86% | Date | Thu Jan 5 11:33:17 GMT 2012 |
Rank | 384 | Aligned Residues | 69 |
% Identity | 17% | Template | c3swrA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 1; |
PDBTitle: structure of human dnmt1 (601-1600) in complex with sinefungin
|
Resolution | 2.49 Å |
|
 |
  |   |
42 | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | |
|
. | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | 100 | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
| . | . |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
Query Sequence |   |
K | Y | T | H | V | L | D | A | G | C | G | P | G | W | M | S | R | H | W | R | E | R | H | A | . |
. |
Q | V | T | A | L | D | L | S | P | P | M | L | V | Q | A | R | Q | K | D | A | A | D | H | Y | L | A | G | D | I | E | S | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | L | A | T | A | T |
Query Conservation |   |
  |   |   |   |
|
|
|
|
|
|
|
|
|   |   |   |   |   |
|   |   |   |   |   | . | . |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |
|
|
|
|
|
|   |
|
|
|
|
|
|
|   |   |
|
|   |   |
|
|   |   |
|   |
|
|
|   |   |
|   |   |
|
|   |   |
|   |
|   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|
Template Sequence |   |
P | K | L | R | T | L | D | V | F | S | G | C | G | G | L | S | E | G | F | H | Q | A | G | I | S | D | T | L | W | A | I | E | M | W | D | P | A | A | Q | A | F | R | L | N | N | P | G | S | T | V | F | T | E | D | C | N | I | L | L | K | L | V | M | A | G | E | T | T | N | S | R | G | Q | R | L | P | Q | K | G | D |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  | S |
| T | T | S |  |  |  |  |  |  |  |  |  | T | S |  |  |  |  |  |  |  |
| S | S |  |  |  |  |  |  |  |  |  |  |
| T | T | S |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  | T |
| S | B |
| T | T |
|
| B |
|
|
| T | T | T |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1137 | . | . | 1140 | . | . | . | . | . | . | . | . | . | 1150 | . | . | . | . | . | . | . | . | . | 1160 | . | . | . | . | . | . | . | . | . | 1170 | . | . | . | . | . | . | . | . | . | 1180 | . | . | . | . | . | . | . | . | . | 1190 | . | . | . | . | . | . | . | . | . | 1200 | . | . | . | . | . | . | . | . | . | 1210 | . | . | . | . | . | . |
  |
  |   |
104 | . | . | . | . | . | 110 |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
Query Sequence |   |
F | D | L | A | W | S | N |
Query Conservation |   |
  |
|   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |
|
|
Template Sequence |   |
V | E | M | L | C | G | G |
Template Known Secondary structure |   |
| S |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
  |   |
1217 | . | . | 1220 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|