Job Description P12999 Confidence 78.43% Date Thu Jan 5 11:33:17 GMT 2012 Rank 359 Aligned Residues 142 % Identity 17% Template c2dg2D_ PDB info PDB header:protein binding Chain: D: PDB Molecule:apolipoprotein a-i binding protein; PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein Resolution 2.45 Å

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		1	.	.	.	.	.	.	.	.	10	.					.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.	50	.	.	.	.								.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure													.	.	.	.					.																									.	.	.	.																.	.	.	.	.	.	.
Query SS confidence													.	.	.	.					.																									.	.	.	.																.	.	.	.	.	.	.
Query Sequence		M	A	T	V	N	K	Q	A	I	A	A	.	.	.	.	A	F	G	R	.	A	A	A	H	Y	E	Q	H	A	D	L	Q	R	Q	S	A	D	A	L	L	A	M	L	P	.	.	.	.	Q	R	K	Y	T	H	V	L	D	A	G	C	G	P	G	.	.	.	.	.	.	.	W	M	S	R	H	W	R	E	R	H
Query Conservation													.	.	.	.					.																									.	.	.	.																.	.	.	.	.	.	.
Alig confidence													.	.	.	.					.																									.	.	.	.									.							.	.	.	.	.	.	.
Template Conservation																																																										.
Template Sequence		V	K	Y	L	S	Q	E	E	A	Q	A	V	D	Q	E	L	F	N	E	Y	Q	F	S	V	D	Q	L	X	E	L	A	G	L	S	C	A	T	A	I	A	K	A	Y	P	P	T	S	X	S	K	S	P	P	T	V	L	.	V	I	C	G	P	G	N	N	G	G	D	G	L	V	C	A	R	H	L	K	L	F	G
Template Known Secondary structure					B															S	S																							S		G	G	G	S	S	S	S	S					.					S	S																T	T
Template Predicted Secondary structure																																																										.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100						.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.												.
Query SS confidence																																						.	.	.	.	.												.
Query Sequence		A	Q	V	T	A	L	D	L	S	P	P	M	L	V	Q	A	R	Q	K	D	A	A	D	H	Y	L	A	G	D	I	E	S	L	P	L	A	.	.	.	.	.	T	A	T	F	D	L	A	W	S	N	L	.	A	V	Q	W	C	G	N	L	S	T	A	L	R	E	L	Y	R	V	V	R	P	K	G	V	V	A	F
Query Conservation																																						.	.	.	.	.												.
Alig confidence																																						.	.	.	.	.												.
Template Conservation
Template Sequence		Y	Q	P	T	I	Y	Y	P	K	R	P	N	K	P	L	F	T	G	L	V	T	Q	C	Q	K	X	D	I	P	F	L	G	E	X	P	P	E	P	X	X	V	D	E	L	Y	E	L	V	V	D	A	I	F	G	F	S	F	K	G	D	V	R	E	P	F	H	S	I	L	S	V	L	S	G	L	T	V	P	I	A
Template Known Secondary structure									S	S				S													T	T			B		S	S			S	S									S						S			T	T							T	T									T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		139	140	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	L	V	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	D	I	P
Template Known Secondary structure					.
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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