Job Description P12999 Confidence 99.14% Date Thu Jan 5 11:33:17 GMT 2012 Rank 196 Aligned Residues 104 % Identity 11% Template c2cmgA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of spermidine synthase from helicobacter2 pylori Resolution 2.0 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.							.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.
Query Sequence		L	A	M	L	P	Q	R	K	Y	T	H	V	L	D	A	G	C	G	P	G	W	M	S	R	H	W	R	E	R	H	A	Q	V	T	A	L	D	L	S	P	P	M	L	V	Q	A	R	.	.	.	.	.	.	Q	K	D	A	A	D	H	Y	L	A	G	D	I	E	S	L	P	L	A	T	A	T	F	D	L	A	W
Query Conservation																																																	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.
Template Conservation
Template Sequence		M	G	G	C	T	K	K	E	L	K	E	V	L	I	V	D	G	F	D	L	E	L	A	H	Q	L	F	K	Y	D	T	H	I	D	F	V	Q	A	D	E	K	I	L	D	S	F	I	S	F	F	P	H	F	H	E	V	K	N	N	K	N	F	T	H	A	K	Q	L	L	D	L	D	I	K	K	Y	D	L	I	F
Template Known Secondary structure					T	T	S	S									S	S										T	T	S	S								S						G	G	G	T	T	T	S	T	T						T		T	T					S	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	L	A	V	Q	W	C	G	N	L	S	T	A	L	R	E	L	Y	R	V	V	R	P	K	G	V	V	A	F	T	T	L	V	Q
Query Conservation
Alig confidence			.	.	.	.	.
Template Conservation			.	.	.	.	.
Template Sequence		C	.	.	.	.	.	L	Q	E	P	D	I	H	R	I	D	G	L	K	R	M	L	K	E	D	G	V	F	I	S	V	A	K	H	P
Template Known Secondary structure			.	.	.	.	.	S	S												T	T														T
Template Predicted Secondary structure			.	.	.	.	.
Template SS confidence
		145						.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions