Job Description P71301 Confidence 99.70% Date Thu Jan 5 12:12:45 GMT 2012 Rank 7 Aligned Residues 161 % Identity 15% Template c3qp5C_ PDB info PDB header:transcription Chain: C: PDB Molecule:cvir transcriptional regulator; PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl) Resolution 3.25 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	W	Q	S	D	Y	S	R	D	Y	E	V	K	N	H	M	E	C	Q	N	R	S	D	K	Y	I	W	S	P	H	D	A	Y	F	Y	K	G	L	S	E	L	I	V	D	I	D	R	L	I	Y	L	S	L	E	K	I	R	K	D	F	V	F	I	N	L	S	T	D	S	L	S	E	F	I	N	R	D	N	E	W
Query Conservation
Alig confidence																				.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	Y	P	S	D	W	L	D	Q	Y	M	K	E	N	Y	A	Q	H	.	.	D	P	I	L	R	I	H	L	G	Q	G	P	V	M	W	E	E	R	F	N	R	A	K	G	A	E	E	K	R	F	I	A	E	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	N	G	M	G	S	G	I	T	F
Template Known Secondary structure			S											T	T	T	T	T	T	.	.		T	T	T	T	S		T	T	S	S									S	S														T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T	T	S
Template Predicted Secondary structure																				.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.																.	.	.	.	.	.	.	.	140	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	A	V	K	G	K	Q	V	V	L	I	A	A	R	K	S	E	A	L	A	N	Y	W	Y	Y	N	S	N	I	R	G	V	V	Y	A	G	L	S	R	D	I	R	K	E	L	V	Y	V	I	N	G	R	F	L	R	K	D	I	K	K	D	K	I	T	D	R	E	M	E	I	I	R	M	T	A	Q	G	M	Q
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	A	S	E	R	N	N	I	G	S	I	L	S	I	A	G	R	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	N	A	A	L	V	A	M	L	N	C	L	T	P	H	L	H	Q	A	A	I	R	V	A	N	L	L	S	Q	R	E	Y	D	I	F	H	W	M	S	R	G	K	T
Template Known Secondary structure						T	T	T	T									S	T	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G																																						T	T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.																	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		P	K	S	I	A	R	I	E	N	C	S	V	K	T	V	Y	T	H	R	R	N	A	E	A	K	L	Y	S	K	.	I	Y	K	L	V
Query Conservation																															.
Alig confidence																															.
Template Conservation
Template Sequence		N	W	E	I	A	T	I	L	D	I	S	E	R	T	V	K	F	H	V	A	N	V	I	R	K	L	N	A	N	N	R	T	H	A	I
Template Known Secondary structure										T																		T		S	S
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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