Job Description P71301 Confidence 99.76% Date Thu Jan 5 12:12:45 GMT 2012 Rank 4 Aligned Residues 162 % Identity 15% Template c1h0mD_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar; PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna Resolution 3.0 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.								.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.
Query Sequence		T	W	Q	S	D	Y	S	R	D	Y	E	V	K	N	H	M	.	.	.	.	.	.	.	E	C	Q	N	R	S	D	K	Y	I	W	S	P	H	D	A	Y	F	Y	K	G	L	S	E	L	I	V	D	I	D	R	L	I	Y	L	S	L	E	K	I	R	K	D	F	V	F	I	N	L	S	T	D	S	L	S	E	F
Query Conservation																		.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.
Template Sequence		N	Y	H	R	Q	W	Q	S	T	Y	F	D	K	K	F	E	A	L	D	P	V	V	K	R	A	R	S	R	K	H	I	F	T	W	S	G	.	.	.	.	.	.	.	.	.	E	H	E	R	P	T	L	S	K	D	E	R	A	F	Y	D	H	A	S	D	F	G	I	R	S	G	I	T	I	P	I	K	T	A	N
Template Known Secondary structure			S											T	T	T	T	T	T									T			S						S	.	.	.	.	.	.	.	.	.	S	T	T	T	T	S	S		S											T	T	T												G	G
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.										.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	R	D	N	E	W	L	S	A	V	K	G	K	Q	V	V	L	I	A	A	R	K	S	E	A	L	A	N	Y	W	Y	Y	N	S	N	I	R	G	V	V	Y	A	G	L	S	R	D	I	R	K	E	L	V	Y	V	I	N	G	R	F	L	R	K	D	I	K	K	D	K	I	T	D	R	E	M	E	I	I	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	G	F	X	S	X	F	T	X	A	S	D	K	P	V	I	D	I	D	A	V	A	A	A	A	T	I	G	.	.	.	.	.	.	.	.	.	.	.	Q	I	H	A	R	I	S	F	L	R	T	T	P	T	A	E	D	A	A	W	L	D	P	K	E	A	T	Y	L	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	G										S	S	S	S														.	.	.	.	.	.	.	.	.	.	.								T	T	T				S		B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.												150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		M	T	A	Q	G	M	Q	P	K	S	I	A	R	I	E	N	C	S	V	K	T	V	Y	T	H	R	R	N	A	E	A	K	L	Y	S	K	.	I	Y	K	L	V
Query Conservation																																						.
Alig confidence																																						.
Template Conservation
Template Sequence		W	I	A	V	G	K	T	X	E	E	I	A	D	V	E	G	V	K	Y	N	S	V	R	V	K	L	R	E	A	X	K	R	F	D	V	R	S	K	A	H	L	T
Template Known Secondary structure				T	T	T										T	T																		T		S	S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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