Job Description P33128 Confidence 96.84% Date Thu Jan 5 11:51:09 GMT 2012 Rank 23 Aligned Residues 88 % Identity 18% Template c1z9oB_ PDB info PDB header:protein binding/lipid binding protein Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif Resolution 1.90 Å

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		27	.	.	30	.		.	.	.	.	.	.	.				.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure							.								.	.	.
Query SS confidence							.								.	.	.
Query Sequence		I	V	I	S	G	.	T	R	V	I	Y	K	S	.	.	.	D	Q	K	S	V	N	V	R	L	E	N	K	G	N	N	P	L	L	V	Q	S	W	L	D	T	G	D	D	N	A	E	P	G	S	I	T	V	P	F	T	A	T	P	P	V	S	R	I	D	A	K	R	G	Q	T	I	K	L	M	Y	T	A	S	T
Query Conservation							.								.	.	.
Alig confidence							.								.	.	.																													.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	L	D	P	P	S	D	L	K	F	K	G	P	F	T	D	V	V	T	T	N	L	K	L	Q	N	P	S	D	R	K	V	C	F	K	V	K	T	T	A	P	R	R	.	.	.	.	.	.	.	.	.	.	Y	C	V	R	P	N	S	G	V	I	D	P	G	S	I	V	T	V	S	V	M	L	Q	P	F	D
Template Known Secondary structure		S				S	S	S						S			S	S												S	S	S									S		G	G	G	.	.	.	.	.	.	.	.	.	.					S	S						T	T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.											.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	P	K	D	R	E	S	V	F	W	F	N	V	L	E	V	P	P	K	P	D	A
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		Y	D	P	N	E	.	K	S	K	H	K	F	M	V	Q	T	I	F	A	P	P	S	D
Template Known Secondary structure				T	T	S	.
Template Predicted Secondary structure							.
Template SS confidence
		78	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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