 |
Job Description | P13518 | Confidence | 72.24% | Date | Thu Jan 5 11:33:38 GMT 2012 |
Rank | 243 | Aligned Residues | 80 |
% Identity | 15% | Template | d2bhua3 |
SCOP info | TIM beta/alpha-barrel
| (Trans)glycosidases
| Amylase, catalytic domain
|
Resolution | 1.1 |
|
 |
  |   |
510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | |
|
. | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
| . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  | . | . | . | . | . | . | . | . |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | K | R | I | I | I | E | L | A | E | A | D | V | G | Q | . |
. |
H | I | S | R | L | Q | P | V | I | R | L | V | N | A | L | G | V | R | V | A | V | . |
. |
. |
. |
. |
. |
. |
. |
N | Q | A | G | L | T | L | V | S | T | S | W | I | K | E | L | N | V | E | L | L | K | L | H | P | G | L | V | R | N | I | E | K | R |
Query Conservation |   |
  |   |   |
|   |   |
|
|   |
|   |   |   |   |   | . | . |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
| . | . | . | . | . | . | . | . |
|
|
|
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |
|
|
|
|   |   |   |
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
Template Conservation |   |
  |   |   |
|
|
|
|   |   |
|   |   |
|   |   |   |
|
|   |   |
|
|   |   |   |
|
|
|
|   |   |
|
|
|   |   |
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |
|
|   | . | . | . | . | . | . | . | . |   |   |
|   |   |   |
|
|   |   |   | . | . | . | . | . | . | . |
Template Sequence |   |
A | D | C | V | F | Y | E | V | H | V | G | T | F | T | P | E | G | T | Y | R | A | A | A | E | K | L | P | Y | L | K | E | L | G | V | T | A | I | Q | V | M | P | L | A | A | F | D | G | Q | R | G | W | G | Y | D | . |
. |
. |
. |
. |
. |
. |
. |
G | A | A | F | Y | A | P | Y | A | P | Y | . |
. |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
G | G |
|
|  |  |  |  |
|  |  |  |  | S | S | S |
| S |  |  |  |  |  |  | T |  |  |  |  |  |  |  | T |
|
|  |  |  |  |
|
|
|  |  |
| S | S | S |
|
|
| S | T | T | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |
| G | G | G | . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
125 | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | 180 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
  |
  |   |
580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | E | N | Q | L | L | V | Q | S | L | V | E | A | C | S | G | T | S | T | Q | V | Y | A | T | G | V |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. |
|
|   |   |
|
|   |   |
|
|   |   |
|
|   |   |
|
|   |
|
|
|
|   |
|
Template Sequence |   |
. |
G | R | P | E | D | L | M | A | L | V | D | A | A | H | R | L | G | L | G | V | F | L | D | V | V |
Template Known Secondary structure |   |
. |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
. |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|