Job Description P13518 Confidence 100.00% Date Thu Jan 5 11:33:38 GMT 2012 Rank 1 Aligned Residues 415 % Identity 23% Template c3pjwA_ PDB info PDB header:lyase Chain: A: PDB Molecule:cyclic dimeric gmp binding protein; PDBTitle: structure of pseudomonas fluorescence lapd ggdef-eal dual domain, i23 Resolution 3.10 Å

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		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	R	E	Q	H	S	R	L	D	T	L	I	R	S	Y	A	A	Q	D	V	K	T	G	L	N	N	R	L	F	F	D	N	Q	L	A	T	L	L	E	D	Q	E	K	V	G	T	H	G	I	V	M	M	I	R	L	P	D	F	N	M	L	S	D	T	W	G	H	S	Q	V	E	E	Q	F	F	T	L	T	N
Query Conservation
Alig confidence																																														.
Template Conservation																																														.
Template Sequence		A	L	F	Q	E	Q	A	E	R	S	E	K	L	R	T	E	S	Y	Q	D	N	L	T	G	L	A	N	R	R	Y	F	E	M	Q	L	N	A	R	V	S	N	P	E	Q	.	A	S	S	G	Y	L	L	L	L	R	V	K	D	L	A	G	L	N	Q	R	L	G	G	Q	R	T	D	E	L	L	K	A	V	G	E
Template Known Secondary structure								T	T											B		T	T	T	S	S														T	T		T	T	T	.												S
Template Predicted Secondary structure																																														.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		288	.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		L	L	S	T	F	M	M	R	Y	.	.	P	G	A	L	L	A	R	Y	H	R	S	D	F	A	A	L	L	P	H	R	T	L	K	E	A	E	S	I	A	G	Q	L	I	K	A	V	D	T	L	P	N	N	K	M	L	D	R	D	D	M	I	H	I	G	I	C	A	W	R	S	G	Q	D	T	E	Q	V	M	E
Query Conservation											.	.
Alig confidence											.	.
Template Conservation
Template Sequence		Q	L	S	R	E	C	A	K	Y	P	E	T	Q	N	L	V	T	R	I	R	G	G	E	F	A	V	L	A	P	G	M	T	R	E	E	A	L	Q	L	A	Q	S	L	D	S	A	L	S	S	L	Y	A	T	G	A	T	D	V	A	A	V	A	S	I	G	L	A	P	F	A	H	G	D	S	P	Q	A	V	L	S
Template Known Secondary structure								S	S		S	T	T	T	T							T	T								T																		T						T	S		S		T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.			.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.		.
Predicted Secondary structure																																																										.	.																					.
Query SS confidence																																																										.	.																					.
Query Sequence		H	A	E	S	A	T	R	N	A	G	L	Q	G	G	N	S	W	A	I	Y	D	D	S	L	P	E	K	G	R	G	N	V	R	W	R	T	L	I	E	Q	M	L	S	R	G	G	P	R	L	Y	Q	K	P	A	V	T	.	.	R	E	G	Q	V	H	H	R	E	L	M	C	R	I	F	D	G	N	E	E	.	V
Query Conservation																																																										.	.																					.
Alig confidence																								.	.	.	.	.	.																													.	.																					.
Template Conservation																								.	.	.	.	.	.
Template Sequence		L	G	D	Q	A	L	A	Q	A	E	G	Q	G	E	Q	N	W	A	C	L	D	G	.	.	.	.	.	.	D	D	H	H	A	W	H	R	L	L	D	Q	A	L	N	Q	R	R	F	E	L	F	F	Q	P	V	V	A	A	Q	D	T	Q	L	V	L	H	Y	K	V	L	S	R	L	L	D	E	Q	G	Q	T	I
Template Known Secondary structure												S		S	S		S							.	.	.	.	.	.		S														T	T												S	S		T	T														T	T	S
Template Predicted Secondary structure																								.	.	.	.	.	.
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400							.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	A	E	Y	M	P	M	V	L	Q	F	G	L	S	E	E	Y	D	R	L	Q	I	S	R	L	I	P	L	L	R	Y	W	P	E	E	N	L	A	I	Q	V	T	V	E	S	L	I	R	P	R	F	Q	R	W	L	R	D	T	L	M	Q	C	E	K	S	Q	R	K	R	I	I	I	E	L	A	E	A	D	V
Query Conservation
Alig confidence																																		.																									.
Template Conservation																																		.																									.
Template Sequence		P	A	G	R	F	L	P	W	L	E	R	F	G	W	T	A	R	L	D	R	L	M	L	E	R	V	L	E	Q	M	A	G	.	H	E	E	S	L	A	L	N	L	S	S	A	T	L	A	D	P	Q	A	L	N	K	V	F	.	E	I	L	R	A	H	S	N	L	G	A	R	L	T	L	E	I	G	E	E	Q	L
Template Known Secondary structure												T	T	T																	G	G	G	.																S	S								.						T	G	G	G	T	T	T							G	G	G
Template Predicted Secondary structure																																		.																									.
Template SS confidence
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.		.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.		.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.
		523	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	H	I	S	R	L	Q	P	V	I	R	L	V	N	A	L	G	V	R	V	A	V	N	Q	A	G	L	T	L	V	S	T	S	W	I	K	E	L	N	V	E	L	L	K	L	H	P	G	L	V	R	N	I	E	K	R	T	E	N	Q	L	L	V	Q	S	L	V	E	A	C	S	G	T	S	T	Q	V	Y	A
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		P	E	Q	.	A	V	L	E	Q	L	T	R	R	L	R	E	L	G	F	S	L	S	L	Q	R	F	G	G	R	F	S	M	I	G	N	L	A	R	L	G	L	A	Y	L	K	I	D	G	S	Y	I	R	A	I	D	Q	E	S	D	K	R	L	F	I	E	A	I	Q	R	A	A	H	S	I	D	L	P	L	I	A
Template Known Secondary structure					.													T	T										S		G	G	G	T	S	S							S						T	T	T	T	T	T	T	T	T																	T	T	T
Template Predicted Secondary structure					.
Template SS confidence
		538	.	540		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.
		603	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	V	R	S	R	S	E	W	Q	T	L	I	Q	R	G	V	T	G	G	Q	G	D	F	F	A	S	S	Q	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	V	E	T	E	G	E	L	S	V	I	R	E	M	G	L	Y	G	V	Q	G	Q	L	F	G	E	P	K	P
Template Known Secondary structure						S									T	T	T		S				S	G	G	G				B
Template Predicted Secondary structure
Template SS confidence
		617	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.