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Job DescriptionP13518
Confidence100.00%DateThu Jan 5 11:33:38 GMT 2012
Rank6Aligned Residues236
% Identity20%Templatec3pfmA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:ggdef domain protein; PDBTitle: crystal structure of a eal domain of ggdef domain protein from2 pseudomonas fluorescens pf
Resolution2.91 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   394.....400.........410.........420... ......430......... 440.........450.........460.........470
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Query Sequence  RGNVRWRTLIEQMLSRGGPRLYQKPAVTRE. . GQVHHRELMCRIFDGN. EEVSSAEYMPMVLQFGLSEEYDRLQISRLIP
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Template Sequence  ADHHAWHRLLDRALSEQHFQLYFQPVVAARDTHLVLHYKVLSRLLDEQGQTIPAGRFLPWLERFGWTSRLDLLXLEQVLR
Template Known Secondary structure  T
SS
TTS
TTS

T
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   408.410.........420.........430.........440.........450.........460.........470.........480.......
 
   471........480.........490.........500.........510.........520.........530.........540.........550
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Query Sequence  LLRYWPEENLAIQVTVESLIRPRFQRWLRDTLMQCEKSQRKRIIIELAEADVGQHISRLQPVIRLVNALGVRVAVNQAGL
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Template Sequence  QXAS. HEDCLALNLSAATLADPHALNRVF. EILRQHSDLGPRLTLEIGEEQLP. EQAXLEQLTRRLRELGFSLSLQRFGG
Template Known Secondary structure  GGG.





.TGGGTTTSSS

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T
TT
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   488.490. ........500.........510..... ....520.........530........ .540.........550.........560....
 
   551........560.........570.........580.........590.........600.........610.........620.........630
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Query Sequence  TLVSTSWIKELNVELLKLHPGLVRNIEKRTENQLLVQSLVEACSGTSTQVYATGVRSRSEWQTLIQRGVTGGQGDFFASS
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Template Sequence  RFSXIGNLARLGLAYLKIDGSYIRDIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELQVIREXGLYGVQGQLFGEP
Template Known Secondary structure  TGGGGGGT
S
GGGGTTTTT
TTT





ST
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SGGG


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   565....570.........580.........590.........600.........610.........620.........630.........640....
 
   631.
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Query Sequence  QP
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Template Sequence  AP
Template Known Secondary structure 
S
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   645.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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