 |
Job Description | P13518 | Confidence | 77.09% | Date | Thu Jan 5 11:33:38 GMT 2012 |
Rank | 200 | Aligned Residues | 110 |
% Identity | 10% | Template | c3luaA_ |
PDB info |
PDB header:transcription regulator | Chain: A: PDB Molecule:response regulator receiver protein; |
PDBTitle: crystal structure of a signal receiver domain of two component signal2 transduction (histidine kinase) from clostridium thermocellum
|
Resolution | 2.40 Å |
|
 |
  |   |
524 | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | |
. | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | H | I | S | R | L | Q | P | V | I | R | L | V | N | A | L | G | V | R | V | A | V | N | Q | A | G | L | T | L | V | S | T | S | W | I | K | E | L | . |
N | V | E | L | L | K | L | H | P | G | L | V | R | N | I | E | K | R | T | E | N | Q | L | L | V | Q | S | L | V | E | A | C | S | G | T | S | T | Q | V | Y | A |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
|
|
|
|
|   |   |   |   |   |   |   |   |
|   |   |
| . |   |   |
|   |
|
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   | . |   |   |
|   |   |
|   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |   |
|   |
|
|   |
|   |   | . | . | . | . |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |
|
|
|
|   |
Template Sequence |   |
Y | F | E | Y | E | R | E | K | T | K | I | I | F | D | N | I | G | E | . |
Y | D | F | I | E | V | E | N | L | K | K | F | Y | S | I | F | K | D | L | D | S | I | T | L | I | I | X | D | I | A | . |
. |
. |
. |
F | P | V | E | K | E | G | L | E | V | L | S | A | I | R | N | N | S | R | T | A | N | T | P | V | I | I |
Template Known Secondary structure |   |
S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|  |  |  |  |  |
| S |  |  |  |  |  | T | T | T | T | T |
|
|
|
| S |  |  |  |  |
| S |
| . | . | . | . | S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | S | G | G | G | T | T |
|
|  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
| . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | |
. | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | |
|
|
|
. | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . |
  |
  |   |
603 | . | . | . | |
. | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . |
Predicted Secondary structure |   |
 |  |
|
| . |
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | G | V | R | . |
S | R | S | E | W | Q | T | L | I | Q | R | G | V | T | G | G | Q | G | D | F | F | A | S | S | Q | P | L | D | T | N | V | K | K | Y | S | Q |
Query Conservation |   |
|
|
|
| . |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
|
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   | . | . | . | . |   |
|   |
|
|   |   |   |   |   |
|   |   |   |
|   |   |
Template Sequence |   |
A | T | K | S | D | N | P | G | Y | R | H | A | A | L | K | F | K | V | S | D | . |
. |
. |
. |
Y | I | L | K | P | Y | P | T | K | R | L | E | N | S | V | R | S |
Template Known Secondary structure |   |
 |  | S |
|
|
|  |  |  |  |  |  |  |  |  | S |
|
| S |  | . | . | . | . |  |  |  | S | S |
|
| T | T |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  | . | . | . | . |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
85 | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | |
|
|
|
. | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|