 |
Job Description | P13518 | Confidence | 25.69% | Date | Thu Jan 5 11:33:38 GMT 2012 |
Rank | 432 | Aligned Residues | 92 |
% Identity | 13% | Template | c2vc6A_ |
PDB info |
PDB header:lyase | Chain: A: PDB Molecule:dihydrodipicolinate synthase; |
PDBTitle: structure of mosa from s. meliloti with pyruvate bound
|
Resolution | 1.95 Å |
|
 |
  |   |
547 | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | |
. | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
. | 610 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
| . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | A | G | L | T | L | V | S | T | S | W | I | K | E | L | N | V | E | L | L | K | L | H | P | G | L | V | R | N | I | . |
E | K | R | T | E | N | Q | L | L | V | Q | S | L | V | E | A | C | S | G | T | S | T | Q | V | Y | A | T | G | V | R | S | R | . |
. |
. |
. |
. |
. |
S | E | W | Q | T | L | I | Q | R | G | V |
Query Conservation |   |
|
|
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |
|
|
|
|   |   |   |
|   |   |   | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|   |   | . | . | . | . | . | . |   |   |   |   |   |
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . |
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|   |
|
|   |   |   |
|
|
|
|
|   |   |   |
|
|   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   | . |   |   |   |
|
|   | . |
|
|   |   |   |
|   |   |   |   |
|   |   |
|   |   |
|   |   |   |
|
|
Template Sequence |   |
D | E | V | A | L | H | D | L | V | E | W | Q | I | E | E | G | S | F | G | L | V | P | C | G | T | T | G | E | S | P | T | L | S | K | S | E | H | E | Q | V | V | E | I | T | I | K | T | A | N | G | . |
R | V | P | V | I | A | . |
G | A | G | S | N | S | T | A | E | A | I | A | F | V | R | H | A | Q | N | A | G | A |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  | T | T | S | G | G | G | T | G | G | G | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | . | S | S |
| B |  |  | . |  |
|
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|
|  |  |  |  | . |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
19 | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | |
. | 70 | . | . | . | . | |
. | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . |
  |
  |   |
620 | . | . | . | |
|
|
. | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . |
Predicted Secondary structure |   |
|  |  |  | . | . | . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | G | G | Q | . |
. |
. |
G | D | F | F | A | S | S | Q | P | L | D | T | N | V | K | K | Y | S | Q |
Query Conservation |   |
  |   |   |
| . | . | . |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
| . | . | . |
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|   |   |
|   |   |   | . | . |   |   |
|   |   |   |
|   |   |   |   |   |   |
Template Sequence |   |
D | G | V | L | I | V | S | P | Y | Y | N | . |
. |
K | P | T | Q | E | G | I | Y | Q | H | F | K | A |
Template Known Secondary structure |   |
S |  |  |  |  |  |
|
|
| S | S | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |
|
|
|
|
|
| . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
97 | . | . | 100 | . | . | . | . | . | . | . | |
|
. | . | 110 | . | . | . | . | . | . | . | . | . | 120 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|