 |
Job Description | P13518 | Confidence | 24.70% | Date | Thu Jan 5 11:33:38 GMT 2012 |
Rank | 440 | Aligned Residues | 99 |
% Identity | 17% | Template | c1x1oC_ |
PDB info |
PDB header:transferase | Chain: C: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; |
PDBTitle: crystal structure of project id tt0268 from thermus thermophilus hb8
|
Resolution | 1.90 Å |
|
 |
  |   |
521 | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | |
|
. | . |
Predicted Secondary structure |   |
 |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
Query Sequence |   |
D | V | G | Q | H | I | S | R | L | Q | P | V | I | R | L | V | N | A | L | G | V | R | V | A | V | N | Q | A | G | L | T | L | V | S | T | S | W | I | K | E | L | N | V | E | L | L | K | L | H | P | G | L | V | R | N | I | E | K | R | T | E | N | Q | L | L | V | Q | S | L | V | E | A | C | S | G | T | . |
. |
S | T |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
|
|
|
|
|   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |
|
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
Template Conservation |   |
  |   |   |
|   |   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |
|
| . | . |
|   |
|   |   |
|
|   |
|
|   |   |   |
|
|
|   |
|   |
|
|   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
R | A | A | G | G | V | G | E | A | V | R | R | A | K | A | R | A | P | H | Y | L | K | V | E | V | E | . |
. |
V | R | S | L | E | E | L | E | E | A | L | E | A | G | A | D | L | I | L | L | D | N | F | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
L | E | A | L | R | E | A | V | R | R | V | G | G | R | V |
Template Known Secondary structure |   |
 |  |  | T | S |  |  |  |  |  |  |  |  |  |  |  |
|
| T | T | S |
|  |  |  |  | . | . |  | S | S |  |  |  |  |  |  |  |  | T | T | T |
| S |  |  |  |  |  | S |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | T | T | S | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  | . | . |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
177 | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | |
|
. | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . |
  |
  |   |
599 | 600 | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | |
. | . | . | . | . | . | . | 630 | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  | . |  |
|
|
|
|
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | V | Y | A | T | G | V | R | S | R | S | E | W | Q | T | L | I | Q | R | G | V | T | G | G | . |
Q | G | D | F | F | A | S | S | Q | P | L | D |
Query Conservation |   |
  |
|
|
|
|
|
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   | . |
|
|   |   |   |   |   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|
|
|
|
|   |   |   |
|
|   |   |   |   |   |   |
|
|
|   |
|   |
|
|
|
|   |   |   |
|   |   |   |
|
Template Sequence |   |
P | L | E | A | S | G | N | M | T | L | E | R | A | K | A | A | A | E | A | G | V | D | Y | V | S | V | G | A | L | T | H | S | A | K | A | L | D |
Template Known Secondary structure |   |
|  |  |  |  | S | S |
|
|  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |
| T |  |  |  |  | S |
|
|
|
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
242 | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|