Phyre 2 alignment of P05020 with d2f6ka1

Job Description P05020
Confidence 98.31% Date Thu Jan 5 10:58:35 GMT 2012

Rank 119 Aligned Residues 261

% Identity 13% Template d2f6ka1

SCOP info TIM beta/alpha-barrel Metallo-dependent hydrolases PP1699/LP2961-like

Resolution 2.50

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	14	.	.	.	.	.	20																							.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50						.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Query Sequence	D	D	W	H	L	H	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	G	D	M	L	K	T	V	V	P	Y	T	S	E	I	Y	G	R	A	I	V	M	P	N	L	A	P	P	V	.	.	.	.	.	T	T	V	E	A	A	V	A	Y	R	Q	R	I	L	D	A
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.
Template Conservation
Template Sequence	I	D	F	H	T	H	Y	L	P	T	S	Y	V	E	A	L	K	R	H	V	P	G	D	P	D	G	W	P	T	P	E	W	T	P	Q	L	T	L	N	F	X	R	D	N	D	I	S	Y	S	I	L	S	L	S	S	P	H	V	N	F	G	D	K	A	E	T	I	R	L	V	E	A	A	N	D	D	G	K	S	L
Template Known Secondary structure																						S	S	G	G	G	S																	T	T										S	S		S		S	S
Template Predicted Secondary structure
Template SS confidence
	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.

	67	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure							.												.
Query SS confidence							.												.
Query Sequence	V	P	A	G	H	D	.	F	T	P	L	M	T	C	Y	L	T	D	.	S	L	D	P	N	E	L	E	R	G	F	N	E	G	V	F	T	A	A	K	L	Y	P	A	N	A	T	T	N	S	S	H	G	V	T	S	I	D	A	I	M	P	V	L	E	R	M	E	K	I	G	M	P	L	L	V	H	G	E	V	T
Query Conservation							.												.
Alig confidence							.												.																							.	.	.	.	.
Template Conservation																																										.	.	.	.	.
Template Sequence	A	Q	Q	Y	P	D	Q	L	G	Y	L	A	S	L	P	I	P	Y	E	L	D	A	V	K	T	V	Q	Q	A	L	D	Q	D	G	A	L	G	V	T	V	P	.	.	.	.	.	T	N	S	R	G	L	Y	F	G	S	P	V	L	E	R	V	Y	Q	E	L	D	A	R	Q	A	I	V	A	L	H	P	N	E	P
Template Known Secondary structure					T	T	T									T	T															T	S			S						.	.	.	.	.	S			T	T			T	T		G	G	G									T	T	T
Template Predicted Secondary structure																																										.	.	.	.	.
Template SS confidence
	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.						.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.

	145	.	.	.	.	150	.														.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	H	A	D	I	D	I	F	.	.	.	.	.	.	.	.	.	.	.	.	.	D	R	E	A	R	F	I	E	S	V	M	E	P	L	R	Q	R	L	T	A	L	K	V	V	F	E	H	I	T	T	K	D	A	A	D	Y	V	R	D	G	N	E	R	L	A	A	T	I	T	P	Q	H	L	M	F	N	R	N	H	M
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.
Template Sequence	A	I	L	P	K	N	V	D	I	D	L	P	V	P	L	L	G	F	F	X	D	T	T	X	T	F	I	N	X	L	K	Y	H	F	F	E	K	Y	P	N	I	K	V	I	I	P	H	A	G	A	F	L	G	I	V	D	D	R	I	A	Q	.	.	.	.	.	.	Y	A	Q	K	V	Y	Q	V	D	V	Y	D	V
Template Known Secondary structure	S				T	T	S	S	T	T																						T	T						T	T						S	G	G	G	T	T											.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.
Template SS confidence
	159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.							220	.	.	.	.	.	.	.	.	.	230	.	.

	212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	V	G	G	V	R	P	H	L	Y	C	L	P	I	L	K	R	N	I	H	Q	Q	A	L	R	E	L	V	A	S	G	F	N	R	V	F	L	G	T	D	S	A	P	H	A	R	H	R	K	E	S	S	C	G	C	A	G	C	F	N	A	P	T	A	L	G	S	Y	A	T	V	F	E	E	M	N	A	L	Q	H
Query Conservation
Alig confidence					.	.	.	.																										.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.																										.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	X	H	H	V	.	.	.	.	Y	F	D	V	A	G	A	V	L	P	R	Q	L	P	T	L	X	S	L	A	Q	P	E	H	L	.	.	L	Y	G	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	Y	T	P	L	D	G	S	R	Q	L	G	H	A	L	A	T	T	D	L	L	T	N	E	Q
Template Known Secondary structure				S	.	.	.	.						S	S		T	T	T						T	T	T	S		G	G	G		.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	S																T	T	S
Template Predicted Secondary structure					.	.	.	.																										.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	233	.	.	.					.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.															.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

	292	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	E	A	F	C	S	V	N	G	P	Q	F	Y	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence	K	Q	A	I	F	Y	D	N	A	H	R	L	L	T
Template Known Secondary structure						T
Template Predicted Secondary structure
Template SS confidence
	293	.	.	.	.	.	.	300	.	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions