Phyre 2 alignment of P05020 with d2bb0a2

Job Description P05020
Confidence 99.15% Date Thu Jan 5 10:58:35 GMT 2012

Rank 98 Aligned Residues 251

% Identity 16% Template d2bb0a2

SCOP info TIM beta/alpha-barrel Metallo-dependent hydrolases Imidazolonepropionase-like

Resolution 2.00

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	11	.	.	.	.	.	.	.	.	20																																										.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.
Query Sequence	R	R	P	D	D	W	H	L	H	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	.	.	G	D	M	L	K	T	V	V	P	Y	T	S	E	I	Y	G	R	A	I	V	M	P	N	L	A
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.
Template Conservation
Template Sequence	P	G	L	V	D	P	H	T	H	L	V	F	G	G	S	R	E	K	E	M	N	L	K	L	Q	G	I	S	Y	L	D	I	L	A	Q	G	G	G	I	L	S	T	V	K	D	T	R	A	A	S	E	E	E	L	L	Q	K	A	H	F	H	L	Q	R	M	L	S	Y	G	T	T	T	A	E	V	K	S	G	Y	G
Template Known Secondary structure								B						S			G	G	G						T	T									T	T		T											S																			T	T										S
Template Predicted Secondary structure
Template SS confidence
	74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.

	48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.				.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence	P	P	V	T	T	V	E	A	A	V	A	Y	R	Q	R	I	L	D	A	V	P	A	G	H	D	F	T	P	L	M	T	C	Y	L	.	.	.	T	D	S	L	D	P	N	E	L	E	R	G	F	N	E	G	V	F	T	A	A	K	L	Y	P	A	N	A	T	T	N	S	S	H	G	V	T	S	I	D	A	I	M
Query Conservation																																			.	.	.
Alig confidence																																			.	.	.
Template Conservation
Template Sequence	L	E	K	E	T	E	L	K	Q	L	R	V	A	K	K	L	H	E	S	Q	P	V	D	L	V	S	T	F	M	G	A	H	A	I	P	P	E	Y	Q	N	D	P	D	D	F	L	D	Q	M	L	S	L	L	P	E	I	K	E	Q	E	L	A	S	F	A	D	I	F	T	E	T	G	V	F	T	V	S	Q	S	R
Template Known Secondary structure		S																		S	S	S										S	S			G	G	G	T	T											T	T							T	T			S					B	B		T	T	S	B
Template Predicted Secondary structure
Template SS confidence
	154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.

	125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	V	L	E	R	M	E	K	I	G	M	P	L	L	V	H	G	E	V	T	H	A	D	I	D	I	F	D	R	E	A	R	F	I	E	S	V	M	E	P	L	R	Q	R	L	T	A	L	K	V	V	F	E	H	I	T	T	K	D	A	A	D	Y	V	R	D	G	N	E	R	L	A	A	T	I	T	P	Q	H	L
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.																					.													.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.																					.													.	.
Template Sequence	R	Y	L	Q	K	A	A	E	A	G	F	G	L	K	I	H	A	D	E	I	D	P	L	.	.	.	.	.	.	.	.	.	.	.	.	G	G	A	E	L	A	G	K	L	K	A	V	S	A	D	H	L	V	G	T	.	S	D	E	G	I	K	K	L	A	E	A	G	.	.	T	I	A	V	L	L	P	G	T	T
Template Known Secondary structure									T	T									S	S	S			.	.	.	.	.	.	.	.	.	.	.	.	S								T	T		S						T	T		.												T	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.																					.													.	.
Template SS confidence
	234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.													.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.	.	.	.	.	.	.			.	290	.	.	.	.	.	.	.	.

	205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	M	F	N	R	N	H	M	L	V	G	G	V	R	P	H	L	Y	C	L	P	I	L	K	R	N	I	H	Q	Q	A	L	R	E	L	V	A	S	G	F	N	R	V	F	L	G	T	D	S	A	P	H	A	R	H	R	K	E	S	S	C	G	C	A	G	C	F	N	A	P	T	A	L	G	S	Y	A	T	V	F	E
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.								.	.	.	.	.	.	.	.	.	.																				.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.								.	.	.	.	.	.	.	.	.	.																				.
Template Sequence	F	Y	L	G	K	S	T	Y	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	A	M	I	D	E	G	V	C	V	S	.	L	A	T	D	F	N	P	.	.	.	.	.	.	.	.	.	.	G	S	S	P	T	E	N	I	Q	L	I	M	S	I	A	A	L	H	L	.
Template Known Secondary structure			T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T					.					B	B	T	.	.	.	.	.	.	.	.	.	.	T	T	B																S	.
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.								.	.	.	.	.	.	.	.	.	.																				.
Template SS confidence
	299	300	.	.	.	.	.	.	.	.																					.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.											.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.

	285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	M	N	A	L	Q	H	F	E	A	F	C	S	V	N	G	P	Q	F	Y	G	L	P	V	N
Query Conservation
Alig confidence	.
Template Conservation	.
Template Sequence	.	K	M	T	A	E	E	I	W	H	A	V	T	V	N	A	A	Y	A	I	G	K	G	E	E
Template Known Secondary structure	.											T	T							T	T		T	T	T
Template Predicted Secondary structure	.
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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