Job Description P05020 Confidence 100.00% Date Thu Jan 5 10:58:35 GMT 2012 Rank 9 Aligned Residues 289 % Identity 11% Template d1m7ja3 SCOP info TIM beta/alpha-barrel Metallo-dependent hydrolases D-aminoacylase, catalytic domain Resolution 1.50

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		12	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.																								.
Query SS confidence													.																								.
Query Sequence		R	P	D	D	W	H	L	H	L	R	D	.	G	D	M	L	K	T	V	V	P	Y	T	S	E	I	Y	G	R	A	I	V	M	P	N	.	L	A	P	P	V	T	T	V	E	A	A	V	A	Y	R	Q	R	I	L	D	A	V	P	A	G	H	D	F	T	P	L	M	T	C	Y	L	T	D	S	L	D	P	N	E
Query Conservation													.																								.
Alig confidence													.																								.																			.	.															.	.	.	.
Template Conservation																																																								.	.															.	.	.	.
Template Sequence		G	F	I	D	S	H	T	H	D	D	N	Y	L	L	K	H	R	D	M	T	P	K	I	S	Q	G	V	T	T	V	V	T	G	N	C	G	I	S	L	A	P	L	A	H	A	N	P	P	A	P	L	D	L	L	.	.	D	E	G	G	S	F	R	F	A	R	F	S	D	Y	.	.	.	.	L	E	A	L	R	A
Template Known Secondary structure						S	S				T	T						T	T						T	T	T							S		T	T			S		S				S	S			T	T	G	G	G	G	.	.		S	S	S					S	S					.	.	.	.
Template Predicted Secondary structure																																																								.	.															.	.	.	.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.					130	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																			.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	R	G	F	N	E	G	V	F	T	A	A	K	L	Y	P	A	N	A	T	T	N	S	S	H	G	V	T	S	I	D	A	.	.	I	M	P	V	L	E	R	M	E	K	I	G	M	P	L	L	V	H	G	E	V	T	H	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																			.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	P	P	A	V	N	A	A	C	M	V	G	H	S	T	L	R	A	A	V	M	P	D	L	R	R	E	A	T	A	D	E	I	Q	A	M	Q	A	L	A	D	D	A	L	A	S	G	A	I	G	I	S	T	G	A	F	Y	P	P	A	A	H	A	S	T	E	E	I	I	E	V	C	R	P	L	I	T	H	G	G
Template Known Secondary structure		S			S	S																	S			S	S																					T								T	T	S	G	G	G	T	T											T						T
Template Predicted Secondary structure
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
							147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.										.	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.			.
Predicted Secondary structure		.	.	.	.	.																																				.	.	.	.	.	.	.	.	.								.	.																				.	.
Query SS confidence		.	.	.	.	.																																				.	.	.	.	.	.	.	.	.								.	.																				.	.
Query Sequence		.	.	.	.	.	D	I	D	I	F	D	R	E	A	R	F	I	E	S	V	M	E	P	L	R	Q	R	L	T	A	L	K	V	V	F	E	H	I	T	T	.	.	.	.	.	.	.	.	.	K	D	A	A	D	Y	V	.	.	R	D	G	N	E	R	L	A	A	T	I	T	P	Q	H	L	M	F	N	.	.	R
Query Conservation		.	.	.	.	.																																				.	.	.	.	.	.	.	.	.								.	.																				.	.
Alig confidence		.	.	.	.	.																			.	.																.	.	.	.	.	.	.	.	.								.	.																				.	.
Template Conservation																									.	.
Template Sequence		V	Y	A	T	H	M	R	D	E	G	E	H	I	V	Q	A	L	E	E	T	F	R	I	.	.	G	R	E	L	D	V	P	V	V	I	S	H	H	K	V	M	G	K	L	N	F	G	R	S	K	E	T	L	A	L	I	E	A	A	M	A	S	Q	D	V	S	L	D	A	Y	P	Y	V	A	G	S	T	M	L	K
Template Known Secondary structure								S		S	S	T	T												.	.					T	S						S					S	G	G	G	T	T	T															S								S		S
Template Predicted Secondary structure																									.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.							.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.				.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.																																	.	.	.											.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.																																	.	.	.											.	.	.	.	.
Query Sequence		N	H	M	L	V	G	G	V	R	P	H	L	Y	C	L	P	I	L	K	R	N	I	H	Q	.	.	.	.	.	.	Q	A	L	R	E	L	V	A	S	G	F	N	R	V	F	L	G	T	D	S	A	P	H	A	R	H	R	K	E	S	S	C	.	.	.	G	C	A	G	C	F	N	A	P	T	.	.	.	.	.
Query Conservation																										.	.	.	.	.	.																																	.	.	.											.	.	.	.	.
Alig confidence																										.	.	.	.	.	.															.																		.	.	.											.	.	.	.	.
Template Conservation																																														.
Template Sequence		Q	D	R	V	L	L	A	G	R	T	L	I	T	W	C	K	P	Y	P	E	L	S	G	R	D	L	E	E	I	A	A	E	R	G	K	S	K	Y	D	V	V	P	E	L	.	Q	P	A	G	A	I	Y	F	M	M	D	E	P	D	V	Q	R	I	L	A	F	G	P	T	M	I	G	S	D	G	L	P	H	D	E
Template Known Secondary structure				T	T	T	T	S	S								S	S		G	G	G	T	T		B								T	T	S										.		S																			S	T	T									T	T		S
Template Predicted Secondary structure																																														.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
										275	.	.	.	.	280	.			.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.								.	.						.
Query SS confidence		.	.	.	.	.	.	.	.								.	.						.
Query Sequence		.	.	.	.	.	.	.	.	A	L	G	S	Y	A	T	.	.	V	F	E	E	M	.	N	A	L	Q	H	F	E	A	F	C	S	V	N	G	P	Q	F	Y	G	L	P	V	N
Query Conservation		.	.	.	.	.	.	.	.								.	.						.
Alig confidence		.	.	.	.	.	.	.	.								.	.						.
Template Conservation
Template Sequence		R	P	H	P	R	L	W	G	T	F	P	R	V	L	G	H	Y	S	R	D	L	G	L	F	P	L	E	T	A	V	W	K	M	T	G	L	T	A	A	K	F	G	L	A	E	R
Template Known Secondary structure		S			T																	T		S	S								T	T	T								T		T	T
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions