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Job DescriptionP05020
Confidence99.86%DateThu Jan 5 10:58:35 GMT 2012
Rank39Aligned Residues270
% Identity9%Templatec3msrA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:amidohydrolases; PDBTitle: the crystal structure of an amidohydrolase from mycoplasma synoviae
Resolution2.16 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.. .......30.........40.........50.........60......
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Query Sequence  PSQVLKIRRPDDWHLHLRD. . . . . . . . . . . . . . . . . GDMLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDA
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Template Sequence  VEKL. . . . GITDCHDHFIKNGGPEVEEHIDFLXLNVDASIKEFKEFIDRGGSTIVTXDPPNV. GRDVLKTLEIANAVKNL
Template Known Secondary structure  GGG
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S
B
SS
GGG
B

TT


TTT.T

GGG
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   15... .20.........30.........40.........50.........60.........70.. .......80.........
 
   67..70.........80.........90.........100.........110...... ...120.........130.........140.
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Query Sequence  VPAGHDFTPLMTCYLTDSLDPNELERGFNEGVFTAAKLYPANATTNSSHG. . . . . VTSIDAIMPVLERMEKIGMPLLVHG
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Template Sequence  G. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GNVIXSTGFHKAKFYDKYSSWLAVVPTEEIVKXCVAEIEEGXDEYNYN
Template Known Secondary structure  T...............................



GGGS
TTTSS
T

BTTTTS
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   90 .........100.........110.........120.........130........
 
   142.......150... ......160.........170.........180........ .190.........200......
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Query Sequence  EVTHADIDIFDR. . . . . . . . . . . . EARFIESVMEPLRQRLTALKVVFEHITTKDAADYV. . . RDGNERLAATITPQHLMF
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Template Sequence  GPVVKRSKAKAGIIKAGTGYGAIDRLELKALEVAARTSILTGCPILVHTQLGTXALEVAKHLIGFGANPDKIQISHLNKN
Template Known Secondary structure  SS


B
S




BTTB





GGG
ST

GGG
GGGS
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   139140.........150.........160.........170.........180.........190.........200.........210........
 
   207..210...... ...220.........230.........240..... ....250.........260.........270.......
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Query Sequence  NRNHMLVGGV. . . . . . . . RPHLYCLPILKRNIHQQALRELVASGFNR. VFLGTDSAPHARHRKESSCGCAGCFNAPTALG
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Template Sequence  PDKYYYEKVIKETGVTLCFDGPDRVKYYPDSLLAENIKYLVDKGLQKHITLSLDAGRILYQRNYGLTKGKQTFGLAYLFD
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TT
TTT

TT
GGG




SGGGSTT




T
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   219220.........230.........240.........250.........260.........270.........280.........290........
 
   278.280... ......290.........300.........
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Query Sequence  SYATVF. EEMNALQHFEAFCSVNGPQFYGLPVN
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Template Sequence  RFLPLLKQVGVSKEAIFDILVNNPKRVLAFDEK
Template Known Secondary structure  TT

TTS



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   299300.........310.........320.........330.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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