Job Description P05020 Confidence 99.50% Date Thu Jan 5 10:58:35 GMT 2012 Rank 72 Aligned Residues 300 % Identity 14% Template c3gipB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:n-acyl-d-glutamate deacylase; PDBTitle: crystal structure of n-acyl-d-glutamate deacylase from2 bordetella bronchiseptica complexed with zinc, acetate and3 formate ions. Resolution 1.50 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.																			.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure																				.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	Q	V	L	K	I	R	R	P	D	D	W	H	L	H	L	R	D	.	G	D	M	L	K	T	V	V	P	Y	T	S	E	I	Y	G	R	A	I	V	M	P	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	P	P	V	T	T	V	E	A	A	V	A	Y	R	Q	R	I	L	D
Query Conservation																				.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	G	K	I	V	A	P	G	F	I	D	V	H	G	H	D	D	L	M	F	V	E	K	P	D	L	R	W	K	T	S	Q	G	I	T	T	V	V	V	G	N	C	G	V	S	A	A	P	A	P	L	P	G	N	T	A	A	A	L	A	L	L	G	E	T	P	L	F	A	D	V	P	A	Y	F	A	A	L	D	A
Template Known Secondary structure		T	T	S									S	S				T	T						T	T						T	T	T									T	T			S		S				T	T				G	G	G	G	G	T		S	S				S	S
Template Predicted Secondary structure
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.															.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	P	A	G	H	D	F	T	P	L	M	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	Y	L	T	D	S	L	D	P	N	E	L	E	R	G	F	N	E	G	V	F	T	A	A	K	L	Y	P	A	N	A	T	T	N	S	S	H	G	V	T	S	I	D	A	I	M	P	V	L	E	R	M	E
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Conservation																																																												.	.	.	.
Template Sequence		Q	R	P	M	I	N	V	A	A	L	V	G	H	A	N	L	R	L	A	A	M	R	D	P	Q	A	A	P	T	A	A	E	Q	Q	A	M	Q	D	M	L	Q	A	A	L	E	A	G	A	V	G	F	S	T	G	L	A	Y	Q	.	.	.	.	P	G	A	V	A	Q	A	A	E	L	E	G	L	A	R	V	A	A
Template Known Secondary structure		S			S	S																	S	S	T	T	S																					T								T	T	S	T	.	.	.	.	T	G	G	G
Template Predicted Secondary structure																																																												.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.					.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.													.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	G	M	P	L	L	V	H	G	E	V	T	H	A	D	I	D	I	F	D	R	E	A	R	F	I	E	S	V	M	E	P	L	R	Q	R	L	T	A	L	K	V	V	F	E	H	I	T	T	K	.	.	.	.	.	.	.	.	.	.	.	.	D	A	A	D	Y	V	R	D	G	N	E	R	L	A	A	T	I
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.													.	.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.													.	.
Template Sequence		E	R	R	R	L	H	T	S	H	I	R	N	E	A	D	.	.	.	.	.	.	G	V	E	A	A	V	E	E	V	L	A	I	.	.	G	R	G	T	G	C	A	T	V	V	S	H	H	K	C	M	M	P	Q	N	W	G	R	S	R	A	T	L	A	N	I	D	R	A	R	E	Q	G	V	E	V	A	L	D	I
Template Known Secondary structure			T	T								S		S	S	T	.	.	.	.	.	.	T												.	.											T	T					S	G	G	G	T	T	T															T
Template Predicted Secondary structure																	.	.	.	.	.	.													.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.							.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.																	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.
Query Sequence		T	P	Q	H	L	M	F	N	R	N	H	M	L	V	G	G	V	R	P	H	L	Y	C	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	L	K	R	N	I	H	Q	Q	A	L	R	E	L	V	A	S	G	F	N	R	V	F	L	G	T	D	S	A	P	H	A	R	H	R	K	.	.	.
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.														.	.	.
Template Conservation																																																																	.
Template Sequence		Y	P	Y	P	G	S	S	T	I	L	I	P	E	R	A	E	T	I	D	D	I	R	I	T	W	S	T	P	H	P	E	C	S	G	E	Y	L	A	D	I	A	A	R	W	G	C	D	K	T	T	A	A	R	R	L	A	P	A	G	A	I	Y	F	.	A	M	D	E	D	E	V	K	R	I	F	Q	H	P	C	C
Template Known Secondary structure			S		S								G	G	G	T	T	T	S	S								S	S		G	G	G	T	T		B									T	S											S							.													S	T	T
Template Predicted Secondary structure																																																																	.
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
							261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.				.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.										.	310	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																								.	.	.																										.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																								.	.	.																										.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	E	S	S	C	G	C	A	G	C	F	N	A	P	T	A	L	G	S	Y	A	T	V	F	.	.	.	E	E	M	N	A	L	Q	H	F	E	A	F	C	S	V	N	G	P	Q	F	Y	G	L	P	V	.	.	.	.	.	.	.	.	.	N	D	T	F	I	E	L	V	R
Query Conservation		.	.	.	.	.																								.	.	.																										.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																								.	.	.																										.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	V	G	S	D	G	L	P	N	D	A	R	P	H	P	R	L	W	G	S	F	T	R	V	L	G	R	Y	V	R	E	A	R	L	M	T	L	E	Q	A	V	A	R	M	T	A	L	P	A	R	V	F	G	F	A	E	R	G	V	L	Q	P	G	A	W	A	D	V	V	V	F	D	P	D
Template Known Secondary structure									T	T		S	S			T																	T		S	S										T								T		T	T		S	S			T	T	S	B								T	T
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions