Job Description P05020 Confidence 99.85% Date Thu Jan 5 10:58:35 GMT 2012 Rank 40 Aligned Residues 305 % Identity 13% Template c3e0lB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:guanine deaminase; PDBTitle: computationally designed ammelide deaminase Resolution 2.37 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20																																.	.				.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.	.
Query Sequence		S	Q	V	L	K	I	R	R	P	D	D	W	H	L	H	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	.	.	.	G	D	M	L	K	T	V	V	P	Y	T	S	E	I	Y	G	R	A	I	V	M	P	N	L	A	P	P	V
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.	.	.																										.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		H	H	E	F	F	M	P	G	L	V	D	T	H	I	H	A	S	Q	Y	S	F	A	G	S	S	I	D	L	P	L	L	E	W	L	T	K	Y	T	F	P	A	E	H	R	F	Q	N	I	D	F	A	E	E	V	Y	T	R	V	V	R	R	T	L	K	N	G	T	T	T	A	C	Y	F	A	T	I	H	.	.	.
Template Known Secondary structure		T	T														G	G	G	G	G	G	T	T	S				S									T							G	G	G	S																	T	T	T										S		.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.											.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.
Query Sequence		T	T	V	E	A	A	V	A	Y	R	Q	R	I	L	D	A	V	P	A	G	H	D	F	T	P	L	M	T	C	Y	L	T	D	S	L	D	P	.	.	.	.	.	.	.	.	.	.	N	E	L	E	R	G	F	N	E	G	V	F	T	A	A	K	L	Y	P	A	N	A	T	T	N	S	S	H	G	V	T	S	I
Query Conservation																																							.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																				.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Template Conservation		.	.																																																																						.	.	.	.	.	.
Template Sequence		.	.	T	D	S	S	L	L	L	A	D	I	T	D	K	F	G	Q	R	A	F	V	G	K	V	C	M	D	L	N	D	T	F	P	E	Y	K	E	T	T	E	E	S	I	K	E	T	E	R	F	V	S	E	M	L	Q	K	N	Y	S	R	V	K	P	I	V	T	P	G	N	G	.	.	.	.	.	.	V	S	E
Template Known Secondary structure		.	.															T											S			S	S	S	T	T	S																				T	T			S	S									S	S	.	.	.	.	.	.
Template Predicted Secondary structure		.	.																																																																						.	.	.	.	.	.
Template SS confidence
				147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.							.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		D	A	I	M	P	V	L	E	R	M	E	K	I	G	M	P	L	L	V	.	H	G	E	V	T	H	A	D	I	D	I	F	D	R	E	A	R	F	I	E	S	V	M	E	P	L	R	Q	R	L	T	A	L	K	V	V	F	E	H	I	T	T	K	D	A	A	D	Y	V	R	D	G	N	E	R	L	A	A	T	I
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		T	L	M	G	E	L	G	N	I	A	K	T	R	D	L	H	I	Q	S	H	I	S	E	N	R	D	E	V	E	A	V	K	N	L	Y	P	S	Y	K	N	Y	T	S	V	Y	D	K	N	N	L	L	T	N	K	T	V	M	A	H	G	C	Y	L	S	A	E	E	L	N	V	F	H	E	R	G	A	S	I	A	H
Template Known Secondary structure														T	T								S		S											S	T	T	S	S	S							T	T	T			S	T	T							T	T													T
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	Q	H	L	M	F	N	R	N	H	M	L	V	G	G	V	R	P	H	L	Y	C	L	P	I	L	K	R	N	I	H	Q	Q	A	L	R	E	L	V	A	S	G	F	N	R	V	F	L	G	T	D	S	A	P	H	A	R	H	R	K	E	S	S	C	G	C	A	G	C	F	N	A	P	T	A	L	G	S	Y
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																.	.	.	.	.
Template Sequence		C	P	N	S	N	L	S	L	S	S	G	F	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	E	V	L	K	H	E	V	K	I	G	.	L	G	T	D	V	A	G	G	Y	S	Y	S	M	L	D	.	.	.	.	.	A	I	R	R	A	V	M	V	S	N	I	L
Template Known Secondary structure									T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T					.					T	T	T	S								.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.																.	.	.	.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.																						.	.	.	.	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.						340	.	.	.	.	.	.	.	.	.	350	.
		280	.	.	.			.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.											.	310	.	.	.	.	.	.	.				.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure						.	.																										.	.	.	.	.	.	.	.	.	.										.	.	.
Query SS confidence						.	.																										.	.	.	.	.	.	.	.	.	.										.	.	.
Query Sequence		A	T	V	F	.	.	E	E	M	N	A	L	Q	H	F	E	A	F	C	S	V	N	G	P	Q	F	Y	G	L	P	V	.	.	.	.	.	.	.	.	.	.	N	D	T	F	I	E	L	V	R	.	.	.	E	E	Q	Q	V	A	E	S	I	A	L	T	D	D	T	L	V	P	F	L	A	G	E	T	V	R	W
Query Conservation						.	.																										.	.	.	.	.	.	.	.	.	.										.	.	.
Alig confidence						.	.																										.	.	.	.	.	.	.	.	.	.										.	.	.																				.
Template Conservation																																																																										.
Template Sequence		L	I	N	K	V	N	E	K	S	L	T	L	K	E	V	F	R	L	A	T	L	G	G	S	Q	A	L	G	L	D	G	E	I	G	N	F	E	V	G	K	E	F	D	A	I	L	I	N	P	K	A	S	D	S	P	I	D	L	F	Y	G	D	F	F	G	D	I	S	E	A	V	I	.	Q	K	F	L	Y	L	G
Template Known Secondary structure				T	T	S	S	S	S												T							T	T		T	T	T	S	S	S			T	T	S	B								T	T		T	T		S					T	T	S	S	S	S		G	G	G	T			.
Template Predicted Secondary structure																																																																										.
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.		.	.	.	.	.	.	430
		345				.	.	.
Predicted Secondary structure			.	.	.
Query SS confidence			.	.	.
Query Sequence		S	.	.	.	V	K	Q
Query Conservation			.	.	.
Alig confidence			.	.	.
Template Conservation
Template Sequence		D	D	R	N	I	E	E
Template Known Secondary structure			G	G	G
Template Predicted Secondary structure
Template SS confidence
		431	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions