Job Description P05020 Confidence 99.70% Date Thu Jan 5 10:58:35 GMT 2012 Rank 46 Aligned Residues 308 % Identity 13% Template c2ubpC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:protein (urease alpha subunit); PDBTitle: structure of native urease from bacillus pasteurii Resolution 2.00 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.					.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																														.	.	.	.
Query SS confidence																																														.	.	.	.
Query Sequence		S	Q	V	L	K	I	R	R	P	D	D	W	H	L	H	L	R	D	G	D	M	L	K	T	V	V	P	Y	T	S	E	I	Y	G	R	A	I	V	M	P	N	L	A	P	.	.	.	.	P	V	T	T	V	E	A	A	V	A	Y	R	Q	R	I	L	D	A	V	P	A	G	H	D	F	T	P	L	M	T	C	Y
Query Conservation																																														.	.	.	.
Alig confidence																							.	.	.																					.	.	.	.																															.	.
Template Conservation																							.	.	.																																																							.	.
Template Sequence		E	G	K	I	V	T	A	G	G	I	D	T	H	V	H	F	I	N	P	D	Q	.	.	.	V	D	V	A	L	A	N	G	I	T	T	L	F	G	G	G	T	G	P	A	E	G	S	K	A	T	T	V	T	P	G	P	W	N	I	E	K	M	L	K	S	T	E	G	L	P	I	N	V	G	I	L	G	K	.	.
Template Known Secondary structure		T	T																	T	T		.	.	.							T	T									S	S	S							S	S																T	T		S	S					B			.	.
Template Predicted Secondary structure																							.	.	.																																																							.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.				.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		L	T	D	S	L	D	P	N	E	L	E	R	G	F	N	E	G	V	F	T	A	A	K	L	Y	P	A	N	A	T	T	N	S	S	H	G	V	T	S	I	D	A	I	M	P	V	L	E	R	M	E	K	I	G	M	P	L	L	V	H	G	E	V	T	H	A	D	I	D	I	F	D	R	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence		.																	.											.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.
Template Conservation		.																	.											.	.	.	.	.	.	.	.	.
Template Sequence		.	G	H	G	S	S	I	A	P	I	M	E	Q	I	D	A	G	.	A	A	G	L	I	H	E	D	W	G	.	.	.	.	.	.	.	.	.	A	T	P	A	S	I	D	R	S	L	T	V	A	D	E	A	D	V	Q	V	A	I	H	S	D	T	L	N	E	A	G	F	L	E	D	T	L	R	A	I	N	G	R
Template Known Secondary structure		.				S	S	S									T	T	.			B			B	G	G	G		.	.	.	.	.	.	.	.	.																	T		B				B			T	T		S	S											T	T
Template Predicted Secondary structure		.																	.											.	.	.	.	.	.	.	.	.
Template SS confidence
			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.										.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
							154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	E	A	R	F	I	E	S	V	M	E	P	L	R	Q	R	L	T	A	L	K	V	V	F	E	H	I	T	T	K	D	A	A	D	Y	V	R	D	G	N	E	R	L	A	A	T	I	T	P	Q	H	L	M	F	N	R	N	H	M	L	V	G	G	V	R	P	H	L	Y	C	L	P	I	L	K	R
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																																											.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.
Template Sequence		V	I	H	S	F	H	V	E	G	A	G	G	G	H	A	P	D	I	M	A	M	A	G	H	P	N	V	L	P	S	S	T	N	P	T	R	P	F	T	V	N	T	I	D	E	H	L	D	M	L	M	V	C	H	H	L	K	Q	N	I	P	E	D	.	.	.	.	.	.	V	A	F	A	D	S	R	I	R	P	E
Template Known Secondary structure						T	T	T	T	S	T	T	S		S	T	T	T	G	G	G	G	G	G		T	T				B			S	T	T	S	S		B	T	T													T	T			T	T	S				.	.	.	.	.	.								S
Template Predicted Secondary structure																																																																	.	.	.	.	.	.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.							.	.	.	.	.	.	.	340	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.			.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		N	I	H	Q	Q	A	L	R	E	L	V	A	S	G	F	N	R	V	F	L	G	T	D	S	A	P	H	A	R	H	R	K	E	S	S	C	G	C	A	G	C	F	N	A	P	T	A	L	G	S	Y	A	T	.	.	V	F	E	E	M	N	A	L	Q	H	F	E	A	F	C	S	V	N	G	P	Q	F	Y	G	L
Query Conservation																																																							.	.
Alig confidence													.	.						.																																			.	.
Template Conservation													.	.						.
Template Sequence		T	I	A	A	E	D	I	L	H	D	L	.	.	G	I	I	S	M	.	M	S	T	D	A	L	A	M	G	R	A	G	E	M	V	L	R	T	W	Q	T	A	D	K	M	K	K	Q	R	G	P	L	A	E	E	K	N	G	S	D	N	F	R	L	K	R	Y	V	S	K	Y	T	I	N	P	A	I	A	Q	G	I
Template Known Secondary structure												T	.	.	T	S	S		B	.					B	T	T	S	S		T	T																			S		T	T			S	S														T								T
Template Predicted Secondary structure													.	.						.
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.			.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
												307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	P	V	N	D	T	F	I	E	L	V	R	E	E	Q	Q	V	A	E	S	I	A	L	T	D	D	T	L	V	P	F	L	A	G	E	T	V	R	W	S	V
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.														.
Template Conservation																					.	.	.	.	.	.	.	.														.
Template Sequence		A	H	E	V	G	S	I	E	E	G	K	F	A	D	L	V	L	W	E	.	.	.	.	.	.	.	.	P	K	F	F	G	V	K	A	D	R	V	I	K	.	G	G	I	I	A	Y	A	Q	I
Template Known Secondary structure		T	T	T	S	S	S			T	T	S	B								.	.	.	.	.	.	.	.	G	G	G	T	T	T	S		S					.	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.														.
Template SS confidence
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.									440	.	.	.	.	.	.	.	.	.	450	.	.		.	.	.	.	.	.	.	460	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions