Job Description P05020 Confidence 100.00% Date Thu Jan 5 10:58:35 GMT 2012 Rank 16 Aligned Residues 334 % Identity 14% Template c2ftwA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:dihydropyrimidine amidohydrolase; PDBTitle: crystal structure of dihydropyrimidinase from dictyostelium discoideum Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.									.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.
Query Sequence		S	Q	V	L	K	I	R	R	P	D	D	W	H	L	H	L	R	D	.	.	.	.	.	.	.	.	G	D	M	L	K	T	V	V	P	Y	T	S	E	I	Y	G	R	A	I	V	M	P	N	L	A	P	P	V	T	T	V	E	A	A	V	A	Y	R	Q	R	I	L	D	A	V	P	A	G	H	D	F	T	P	L
Query Conservation																				.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.																																										.	.
Template Conservation																																																																					.	.
Template Sequence		T	D	K	L	L	L	P	G	G	I	D	T	H	T	H	F	Q	L	P	F	M	G	T	V	S	V	D	D	F	D	I	G	T	Q	A	A	V	A	G	G	T	T	F	I	I	D	F	V	I	P	T	R	G	Q	S	L	L	E	A	Y	D	Q	W	K	K	W	A	.	.	D	E	K	V	N	C	D	Y	S	L	H
Template Known Secondary structure		T	T														T	T				T	T				S	S												T	T												T	T															.	.		T	T		S	S
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		M	T	C	Y	L	T	D	S	L	D	P	N	E	L	E	R	G	F	N	E	G	V	F	T	A	A	K	L	Y	P	A	N	A	T	T	N	S	S	H	G	V	T	S	I	D	A	I	M	P	V	L	E	R	M	E	K	I	G	M	P	L	L	V	H	G	E	V	T	H	A	D	I	D	I	F	D	R	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																															.	.	.	.	.																																												.	.	.
Template Conservation																															.	.	.	.	.
Template Sequence		V	A	I	T	W	W	S	E	Q	V	S	R	E	M	E	I	L	V	K	E	R	G	V	N	S	F	C	F	M	.	.	.	.	.	A	Y	K	N	S	F	M	V	T	D	Q	E	M	Y	H	I	F	K	R	C	K	E	L	G	A	I	A	Q	V	H	A	E	N	G	D	M	V	F	E	G	Q	K	K	M	L	E
Template Known Secondary structure						S																S				B			B	S	.	.	.	.	.	S		T	T	T	T	B																	T		B				B		S
Template Predicted Secondary structure																															.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160						.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
																	154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.				.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	R	F	I	E	S	V	M	E	P	L	R	Q	R	L	T	A	L	K	V	V	F	E	H	I	T	T	K	D	A	A	D	Y	V	.	.	.	R	D	G	N	E	R	L	A	A	T	I	T	P	Q	H	L	M	F	N	R	N	H	M	L	V	G	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.
Template Conservation
Template Sequence		M	G	I	T	G	P	E	G	H	E	L	S	R	P	E	A	L	E	A	E	A	T	N	R	A	I	V	I	A	D	S	V	C	T	P	V	Y	I	V	H	V	Q	S	I	G	A	A	D	V	I	C	K	H	R	K	E	G	V	R	V	Y	G	E	P	I	A	A	G	L	G	V	D	G	S	H	M	W	N	H	D
Template Known Secondary structure		T	T			S	T							S		T																		T							S																T	T								B								G	G	G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		216			.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260						.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.			.	.
Predicted Secondary structure			.	.													.																																	.	.	.	.	.																								.	.
Query SS confidence			.	.													.																																	.	.	.	.	.																								.	.
Query Sequence		V	.	.	R	P	H	L	Y	C	L	P	I	L	K	R	.	N	I	H	Q	Q	A	L	R	E	L	V	A	S	G	F	N	R	V	F	L	G	T	D	S	A	P	H	A	R	H	R	K	.	.	.	.	.	E	S	S	C	G	C	A	G	C	F	N	A	P	T	A	L	G	S	Y	A	T	V	F	.	.	E	E
Query Conservation			.	.													.																																	.	.	.	.	.																								.	.
Alig confidence			.	.													.																			.														.	.	.	.	.																								.	.
Template Conservation																																				.
Template Sequence		W	R	H	A	A	A	F	V	M	G	P	P	I	R	P	D	P	R	T	K	G	V	L	M	D	Y	L	A	R	G	D	L	D	C	.	V	G	T	D	N	C	T	F	C	A	D	Q	K	A	M	G	K	D	D	F	T	K	I	P	N	G	V	N	G	V	E	D	R	M	S	I	V	W	E	N	G	V	N	T	G
Template Known Secondary structure							T	T			S	S						T	T												T	S	S			.		B			B									G	G	G	T	T		G	G	G	S				B			T	T	T										T	T	T	T
Template Predicted Secondary structure																																				.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.											.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.
Query Sequence		M	N	A	L	Q	H	F	E	A	F	C	S	V	N	G	P	Q	F	Y	G	L	P	V	.	.	.	.	.	.	.	.	.	.	N	D	T	F	I	E	L	V	R	E	E	Q	Q	V	A	E	S	I	A	L	T	D	D	T	L	V	P	F	L	A	G	E	T	V	R	W	S	V	K
Query Conservation																									.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.																														.
Template Conservation																																																																.
Template Sequence		K	L	T	W	C	Q	F	V	R	A	T	S	S	E	R	A	R	I	F	N	I	Y	P	R	K	G	R	I	D	V	G	C	D	G	D	I	V	I	W	D	P	N	Q	S	K	T	I	S	K	D	T	H	H	H	A	V	D	F	N	I	F	E	.	G	I	K	V	T	G	I	A	V
Template Known Secondary structure		S	S										T							T	T		T	T	T	S	S			S	T	T	S	B																T	T	T				S	S	S			T	T	T	.	T
Template Predicted Secondary structure																																																																.
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.		.	430	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions