Job Description P05020 Confidence 99.40% Date Thu Jan 5 10:58:35 GMT 2012 Rank 79 Aligned Residues 300 % Identity 11% Template c1rjqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:d-aminoacylase; PDBTitle: the crystal structure of the d-aminoacylase mutant d366a Resolution 1.80 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.																				50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure																				.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	Q	V	L	K	I	R	R	P	D	D	W	H	L	H	L	R	D	.	G	D	M	L	K	T	V	V	P	Y	T	S	E	I	Y	G	R	A	I	V	M	P	N	L	A	P	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	T	V	E	A	A	V	A	Y	R	Q	R	I	L
Query Conservation																				.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	K	V	V	S	P	G	F	I	D	S	H	T	H	D	D	N	Y	L	L	K	H	R	D	M	T	P	K	I	S	Q	G	V	T	T	V	V	T	G	N	C	G	I	S	L	A	P	L	A	H	A	N	P	P	A	P	L	D	L	L	D	E	G	G	S	F	R	F	A	R	F	S	D	Y	L	E	A	L	R
Template Known Secondary structure		T	T										S	S				T	T						T	T						T	T	T							S		T	T			S		S				S	S			T	T	G	G	G	G		S	S	S					S	S
Template Predicted Secondary structure
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.									80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.							.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Query Sequence		D	A	V	P	A	G	H	D	F	T	P	L	M	T	C	.	.	.	.	.	.	.	.	Y	L	T	D	S	L	D	P	N	E	L	E	R	G	F	N	E	.	.	.	.	.	.	G	V	F	T	A	A	K	L	Y	P	A	N	A	T	T	N	S	S	H	G	V	T	S	I	D	A	I	M	P	V	L	E	R	M
Query Conservation																	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.																		.	.	.	.	.	.																		.	.	.	.
Template Conservation																																																																	.	.	.	.
Template Sequence		A	A	P	P	A	V	N	A	A	C	M	V	G	H	S	T	L	R	A	A	V	M	P	D	L	R	R	E	A	T	A	D	E	I	Q	A	M	Q	A	L	A	D	D	A	L	A	S	G	A	I	G	I	S	T	G	A	F	Y	P	P	A	A	H	.	.	.	.	A	S	T	E	E	I	I	E	V	C	R	P	L
Template Known Secondary structure			S			S	S																	S			S	S																					T								T	T	S	G	G	G	T	T	.	.	.	.											T
Template Predicted Secondary structure																																																																	.	.	.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.					.	.	200	.	.	.	.	.	.	.	.	.	210
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.										.	.	.	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.								.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.								.	.
Query Sequence		E	K	I	G	M	P	L	L	V	H	G	E	V	T	H	A	D	I	D	I	F	D	R	E	A	R	F	I	E	S	V	M	E	P	L	R	Q	R	L	T	A	L	K	V	V	F	E	H	I	T	T	.	.	.	.	.	.	.	.	.	K	D	A	A	D	Y	V	.	.	R	D	G	N	E	R	L	A	A	T	I
Query Conservation																																																					.	.	.	.	.	.	.	.	.								.	.
Alig confidence																		.	.	.	.	.	.													.	.																.	.	.	.	.	.	.	.	.								.	.
Template Conservation																		.	.	.	.	.	.													.	.
Template Sequence		I	T	H	G	G	V	Y	A	T	H	M	R	D	E	G	E	.	.	.	.	.	.	H	I	V	Q	A	L	E	E	T	F	R	I	.	.	G	R	E	L	D	V	P	V	V	I	S	H	H	K	V	M	G	K	L	N	F	G	R	S	K	E	T	L	A	L	I	E	A	A	M	A	S	Q	D	V	S	L	D	A
Template Known Secondary structure					T								S		S	S	T	.	.	.	.	.	.	T												.	.					T	S						S					S	G	G	G	T	T	T													T	T	S
Template Predicted Secondary structure																		.	.	.	.	.	.													.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.							.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.									.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																										.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	P	Q	H	L	M	F	N	R	N	H	M	L	V	G	G	V	R	P	H	L	Y	C	L	.	.	.	.	.	.	.	.	P	I	L	K	R	N	I	H	Q	Q	A	L	R	E	L	V	A	S	G	F	N	R	V	F	L	G	T	D	S	A	P	H	A	R	H	R	K	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																										.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.																								.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																									.
Template Sequence		Y	P	Y	V	A	G	S	T	M	L	K	Q	D	R	V	L	L	A	G	R	T	L	I	T	W	C	K	P	Y	P	E	L	S	G	R	D	L	E	E	I	A	A	E	R	G	K	S	K	Y	D	V	V	P	E	L	.	Q	P	A	G	A	I	Y	F	M	M	D	E	P	D	V	Q	R	I	L	A	F	G	P	T
Template Known Secondary structure			S		S										T	T	T	T	S	S								S	S		G	G	G	T	T		B								T	T	S										.		S																			S	T	T
Template Predicted Secondary structure																																																									.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
							261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.				.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.										.	310	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																								.	.	.																										.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																								.	.	.																										.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	E	S	S	C	G	C	A	G	C	F	N	A	P	T	A	L	G	S	Y	A	T	V	F	.	.	.	E	E	M	N	A	L	Q	H	F	E	A	F	C	S	V	N	G	P	Q	F	Y	G	L	P	V	.	.	.	.	.	.	.	.	.	N	D	T	F	I	E	L	V	R
Query Conservation		.	.	.	.	.																								.	.	.																										.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																								.	.	.																										.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	I	G	S	A	G	L	P	H	D	E	R	P	H	P	R	L	W	G	T	F	P	R	V	L	G	H	Y	S	R	D	L	G	L	F	P	L	E	T	A	V	W	K	M	T	G	L	T	A	A	K	F	G	L	A	E	R	G	Q	V	Q	P	G	Y	Y	A	D	L	V	V	F	D	P	A
Template Known Secondary structure									T	T		S	S			T																	T		S	S								T	T	T							T	T		T	T		S	S			T	T	S	B								T	T
Template Predicted Secondary structure
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions