Phyre 2 alignment of P05020 with c1o12B

Job Description P05020
Confidence 99.16% Date Thu Jan 5 10:58:35 GMT 2012

Rank 97 Aligned Residues 272

% Identity 13% Template c1o12B_

PDB info PDB header:hydrolase Chain: B: PDB Molecule:n-acetylglucosamine-6-phosphate deacetylase; PDBTitle: crystal structure of n-acetylglucosamine-6-phosphate2 deacetylase (tm0814) from thermotoga maritima at 2.5 a3 resolution

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.							.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.
Query Sequence	S	Q	V	L	K	I	R	R	P	D	D	W	H	L	H	L	R	D	.	.	.	.	.	.	G	D	M	L	K	T	V	V	P	Y	T	S	E	I	Y	G	R	A	I	V	M	P	N	L	A	P	P	V	T	T	V	E	A	A	V	A	Y	R	Q	R	I	L	D	A	V	P	A	G	H	D	F	T	P	L	M	T
Query Conservation																			.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.
Template Conservation
Template Sequence	P	R	G	V	L	X	P	G	F	V	D	P	H	I	H	G	V	V	G	A	D	T	X	N	C	D	F	S	E	X	E	E	F	L	Y	S	Q	G	V	T	T	F	L	A	T	T	V	S	T	S	L	E	K	X	K	E	I	L	R	K	A	R	D	Y	I	L	E	N	P	S	T	S	L	L	G	V	H	L	E	G
Template Known Secondary structure		S	S															T	T			T	T	T	T											T	T	T										S																				S	T	T		S
Template Predicted Secondary structure
Template SS confidence
	37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.

	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	C	Y	L	T	D	S	L	D	P	N	E	L	E	R	G	F	N	E	G	V	F	T	A	A	K	L	Y	P	A	N	A	T	T	N	S	S	H	G	V	T	S	I	D	A	I	M	P	V	L	E	R	M	E	K	I	G	M	P	L	L	V	H	G	E	V	T	H	A	D	I	D	I	F	D	R	E	A	R	F	I
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template Sequence	P	Y	I	S	K	E	K	K	G	A	H	S	E	K	H	I	R	P	P	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	E	L	S	E	I	D	S	P	A	K	X	L	T	F	A	P	E	I	E	S	S	E	L	L	L	R	L	V	K	R	.	.	.
Template Known Secondary structure	S	S	S		S	T	T		T	T	S		T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T			T	T								T	T	S	T	T	G	G	G	G	G	G	G	G	G	G	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template SS confidence
	117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.																										.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.

	159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210								.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																						.																																.	.	.	.	.	.	.
Query SS confidence																						.																																.	.	.	.	.	.	.
Query Sequence	E	S	V	M	E	P	L	R	Q	R	L	T	A	L	K	V	V	F	E	H	I	.	T	T	K	D	A	A	D	Y	V	R	D	G	N	E	R	L	A	A	T	I	T	P	Q	H	L	M	F	N	R	N	H	.	.	.	.	.	.	.	M	L	V	G	G	V	R	P	H	L	Y	C	L	P	I	L	K	R	N	I
Query Conservation																						.																																.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.										.																																.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	D	I	V	L	S	A	G	H	S	I	A	T	F	E	E	F	X	K	F	Y	K	E	G	V	K	R	I	T	H	F	P	N	G	L	K	P	L	H	H	R	E	I	G	I	T	G	A	G	L	L	L	D	D	V	K	L	E	L	I	C	D	G	V	H	L	S	R	E
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	T							S	B													T	T					S	S	T	T	T	T	B					S	S												T	T								S	S	S	S	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.

	231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.															.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.			.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query Sequence	H	Q	Q	A	L	R	E	L	V	A	S	G	F	N	R	V	F	L	G	T	D	S	A	P	H	A	R	H	R	K	E	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	C	G	C	A	G	C	F	N	A	P	T	A	L	G	S	Y	A	T	.	.	V	F	E	E	M	N	A	L	Q	H	F	E	A
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Alig confidence																	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation																	.
Template Sequence	X	V	K	L	V	Y	K	V	K	K	A	N	G	I	V	L	.	V	T	D	S	I	S	A	A	G	L	K	D	G	T	T	T	L	G	D	L	V	V	K	V	K	D	G	V	P	R	L	E	D	G	T	L	A	G	S	T	L	F	F	S	Q	A	V	K	N	F	R	K	F	T	G	C	S	I	T	E	L	A	K
Template Known Secondary structure										T	G	G	G				.				B		T	T	T	T	S		S						T	T							T	T					T	T	S		B			B
Template Predicted Secondary structure																	.
Template SS confidence
	237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.

	295	.	.	.	.	300	.	.	.	.	.	.										.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.
Query Sequence	F	C	S	V	N	G	P	Q	F	Y	G	L	.	.	.	.	.	.	.	.	.	P	V	N	D	T	F	I	E	L	V	R
Query Conservation													.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	V	S	S	Y	N	S	C	V	E	L	G	L	D	D	R	G	R	I	A	E	G	T	R	A	D	L	V	L	L	D	E	D
Template Known Secondary structure			T								T		T	T	S	S			S	T	T	S	B								T	T
Template Predicted Secondary structure
Template SS confidence
	316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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