Job Description P05020 Confidence 99.45% Date Thu Jan 5 10:58:35 GMT 2012 Rank 76 Aligned Residues 301 % Identity 13% Template c1fwcC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:urease; PDBTitle: klebsiella aerogenes urease, c319a variant at ph 8.5 Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.					.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																				.	.	.	.
Query SS confidence																				.	.	.	.
Query Sequence		S	Q	V	L	K	I	R	R	P	D	D	W	H	L	H	L	R	D	.	.	.	.	G	D	M	L	K	T	V	V	P	Y	T	S	E	I	Y	G	R	A	I	V	M	P	N	L	A	P	P	V	T	T	V	E	A	A	V	A	Y	R	Q	R	I	L	D	A	V	P	A	G	H	D	F	T	P	L	M	T	C	Y
Query Conservation																				.	.	.	.
Alig confidence																				.	.	.	.																																			.	.	.																				.	.
Template Conservation																																																										.	.	.																				.	.
Template Sequence		E	G	K	I	V	T	A	G	G	I	D	T	H	I	H	W	I	C	P	Q	Q	A	E	E	A	L	V	S	G	V	T	T	M	V	G	G	G	T	G	P	A	A	G	T	H	A	T	T	C	T	P	G	P	W	Y	I	.	.	.	S	R	M	L	Q	A	A	D	S	L	P	V	N	I	G	L	L	G	K	.	.
Template Known Secondary structure		T	T															S		T										T										S	S																	.	.	.								T	T	S	S	S					B			.	.
Template Predicted Secondary structure																																																										.	.	.																				.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.				.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.	.	.
Query Sequence		L	T	D	S	L	D	P	N	E	L	E	R	G	F	N	E	G	V	F	T	A	A	K	L	Y	P	A	N	A	T	T	N	S	S	H	G	V	T	S	I	D	A	I	M	P	V	L	E	R	M	E	K	I	G	M	P	L	L	V	H	G	E	V	T	H	A	D	I	D	I	F	D	R	.	.	.	.	.	.	.
Query Conservation																																																																											.	.	.	.	.	.	.
Alig confidence		.																						.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.
Template Conservation		.																						.	.	.	.	.	.	.	.	.	.
Template Sequence		.	G	N	V	S	Q	P	D	A	L	R	E	Q	V	A	A	G	V	I	G	L	I	.	.	.	.	.	.	.	.	.	.	H	E	D	W	G	A	T	P	A	A	I	D	C	A	L	T	V	A	D	E	M	D	I	Q	V	A	L	H	S	D	T	L	N	E	S	G	F	V	E	D	T	L	A	A	I	G	G	R
Template Known Secondary structure		.				S												T		S	B			.	.	.	.	.	.	.	.	.	.	B	G	G	G																		T		B				B			T	T		S	S											T	T
Template Predicted Secondary structure		.																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
			197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.											.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
							154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	E	A	R	F	I	E	S	V	M	E	P	L	R	Q	R	L	T	A	L	K	V	V	F	E	H	I	T	T	K	D	A	A	D	Y	V	R	D	G	N	E	R	L	A	A	T	I	T	P	Q	H	L	M	F	N	R	N	H	M	L	V	G	G	V	R	P	H	L	Y	C	L	P	I	L	K	R
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																																																											.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.
Template Sequence		T	I	H	T	F	H	T	E	G	A	G	G	G	H	A	P	D	I	I	T	A	C	A	H	P	N	I	L	P	S	S	T	N	P	T	L	P	Y	T	L	N	T	I	D	E	H	L	D	M	L	M	V	A	H	H	L	D	P	D	I	A	E	D	.	.	.	.	.	.	V	A	F	A	E	S	R	I	R	R	E
Template Known Secondary structure						T	T	T	T	S	T	T	S	S	S	T	T	T	G	G	G	G	G	G	S	T	T							S	T	T	S	S		B	T	T														T			T	T	S				.	.	.	.	.	.						T	T
Template Predicted Secondary structure																																																																	.	.	.	.	.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.							330	.	.	.	.	.	.	.	.	.	340
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.				.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		N	I	H	Q	Q	A	L	R	E	L	V	A	S	G	F	N	R	V	F	L	G	T	D	S	A	P	H	A	R	H	R	K	E	S	S	.	.	.	C	G	C	A	G	C	F	N	A	P	T	A	L	G	S	Y	A	T	V	F	E	E	M	N	A	L	Q	H	F	E	A	F	C	S	V	N	G	P	Q	F	Y	G
Query Conservation																																					.	.	.
Alig confidence													.	.						.																	.	.	.																		.
Template Conservation													.	.						.																																					.
Template Sequence		T	I	A	A	E	D	V	L	H	D	L	.	.	G	A	F	S	L	.	T	S	S	D	S	Q	A	M	G	R	V	G	E	V	I	L	R	T	W	Q	V	A	H	R	M	K	V	Q	R	G	A	L	A	E	E	T	.	G	D	N	D	N	F	R	V	K	R	Y	I	A	K	Y	T	I	N	P	A	L	T	H	G
Template Known Secondary structure												T	.	.	T	S	S			.					T	T	S	S	S		T	T																			S		T	T			.	S	S	S											T	T	T							T	T
Template Predicted Secondary structure													.	.						.																																					.
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.			.	.	.	.	.		.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.		.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		306											.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.
Query Sequence		L	.	.	.	.	.	.	.	.	.	.	P	V	N	D	T	F	I	E	L	V	R	E	E	Q	Q	V	A	E	S	I	A	L	T	D	D	T	L	V	P	F	L	A	G	E
Query Conservation			.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.														.
Template Conservation																						.	.	.	.	.	.	.	.														.
Template Sequence		I	A	H	E	V	G	S	I	E	V	G	K	L	A	D	L	V	V	W	S	.	.	.	.	.	.	.	.	P	A	F	F	G	V	K	P	A	T	V	I	K	.	G	G	M
Template Known Secondary structure			T	T	T	S	S	S	S		T	T	S	B								.	.	.	.	.	.	.	.	G	G	G	T	T	T	S		S					.	T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.														.
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.									.	.	.	440	.	.	.	.	.	.	.	.	.		450	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions