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Job DescriptionP05020
Confidence99.62%DateThu Jan 5 10:58:35 GMT 2012
Rank59Aligned Residues276
% Identity14%Templatec1e9yB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:urease subunit beta; PDBTitle: crystal structure of helicobacter pylori urease in complex with2 acetohydroxamic acid
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40........ .50.........60.........70.........80
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Query Sequence  SQVLKIRRPDDWHLHLRDGDMLKTVVPYTSEIYGRAIVMPNLAP. . . . PVTTVEAAVAYRQRILDAVPAGHDFTPLMTCY
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Template Sequence  EGLIVTAGGIDTHIHFISPQQ. . . IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAK. .
Template Known Secondary structure  TT

TT
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   124.....130.........140.... .....150.........160.........170.........180.........190........
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  LTDSLDPNELERGFNEGVFTAAKLYPANATTNSSHGVTSIDAIMPVLERMEKIGMPLLVHGEVTHADIDIFDREARFIES
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Template Sequence  . GNASNDASLADQIEAGAIGFIHEDW. . . . . . . . . . GTTPSAINHALDVADKYDVQVAIHTDTLNEAGCV. . . . . . . . . .
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   199200.........210.........220... ......230.........240.........250.......
 
   161........170.........180........ .190........ .200.........210......
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Query Sequence  VMEPLRQRLTALKVVFEHITTKDAADYV. . . RDGNERLAAT. . . . . . . . . . . . . . . . . . . . . ITPQHLMFNRNHMLVGGV
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Template Sequence  . . EDTMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPTIPFTVNTEAEHMDMLMVCHHKDKSIKED. . . . .
Template Known Secondary structure  ..TT

TTTTSTTS
STTTGGGGGGSTT
GGG
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   259260.........270.........280.........290.........300.........310.........320.........330.
 
   217..220.........230.........240.........250.........260.........270.........280. ........290....
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Query Sequence  RPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNAPTALGSYAT. . VFEEMNALQHFEA
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Template Sequence  . VQFADSRIRPQTIAAEDTLHDM. . GAFSI. TSSDSQAMGRVGEVITRTWQTADKNKKEFGRLKEEKGDNDNFRIKRYLS
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   332.......340.........350... ..... .360.........370.........380.........390.........400.......
 
   295....300........ .310.......
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Query Sequence  FCSVNGPQFYGLPV. . . . . . . . . . NDTFIELVR
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Template Sequence  KYTINPAIAHGISEYVGSVEVGKVADLVLWSPA
Template Known Secondary structure  GGTTT
TTTSSSS
TTSB


TT
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   408.410.........420.........430.........440
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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