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Job DescriptionP0A9V1
Confidence100.00%DateThu Jan 5 11:11:27 GMT 2012
Rank42Aligned Residues226
% Identity25%Templatec3b5xB_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae
Resolution5.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10... ......20.........30.........40.........50.........60.........70.........80.
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Query Sequence  LTAKNLAKAY. . KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDDDISLLPLHARARRGIG
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Template Sequence  VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK. LTNLRRHFA
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B

S



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   342.......350.........360.........370.........380.........390.........400.........410. ........420
 
   82.......90.........100.........110.........120.........130....... ..140.........150
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Query Sequence  YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQS. . . . . . . . . . . LSGGERRRVEIAR
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Template Sequence  LVSQNVHLFND. TIANNIAYAAEGEYTREQ. . . . . . IEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIAR
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TT.
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TT
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   421........430. ........440......... 450.........460.........470.........480.........490...
 
   151........160.........170.........180.........190.........200.........210.........220.........230
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Query Sequence  ALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHV
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Template Sequence  ALLRDAPVLILDEATSALDTESERAIQAALDELQK. NKTVLVIAHRLSTI. EQADEILVVDEGEIIERGRHADLLAQDGA
Template Known Secondary structure  T


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GGGG.GT
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   494.....500.........510.........520........ .530.........540.. .......550.........560.........570.
 
   231........
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Query Sequence  KRVYLGEDF
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Template Conservation     
   
 
Template Sequence  YAQLHRIQF
Template Known Secondary structure  TTTTSTTS
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   572.......580
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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